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14412_4#51

Organism name:
Haemophilus influenzae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2842STDY5882079
BioSample:
SAMEA2674769
BioProject:
PRJEB4909
Submitter:
SC
Date:
2016/02/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900027015.1 (latest)
RefSeq assembly accession:
GCF_900027015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FFJI01
Genome coverage:
100x

IDs: 666301 [UID] 2957788 [GenBank] 3055868 [RefSeq]

See Genome Information for Haemophilus influenzae

Pathogen Detection Resources

There are 1324 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,835,755
Total ungapped length1,835,173
Gaps between scaffolds0
Number of scaffolds15
Scaffold N50230,509
Scaffold L503
Number of contigs17
Contig N50230,509
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)15

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,835,755151,835,173230,50920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus influenzaeHaemophilus influenzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001457655.1Haemophilus influenzaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457655.1Haemophilus influenzaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.0695.8993.07
Best-match type98.0695.8993.07

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna