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AUL_PRJEB4421_v1

Organism name:
Oncorhynchus mykiss (rainbow trout)
BioSample:
SAMEA3146328
BioProject:
PRJEB4421
Submitter:
Genoscope CEA
Date:
2014/04/29
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_900005705.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CCAF01
Genome coverage:
21x

IDs: 1080921 [UID] 4412098 [GenBank]

See Genome Information for Oncorhynchus mykiss

There are 2 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length1,877,559,617
Total assembly gap length419,186,132
Gaps between scaffolds120
Number of scaffolds79,942
Scaffold N50383,627
Scaffold L501,014
Number of contigs221,128
Contig N509,390
Contig L5043,966
Total number of chromosomes and plasmids28
Number of component sequences (WGS or clone)192,415

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_900005704.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1HG973520.1n/an/a0
Chromosome 2HG973521.1n/an/a0
Chromosome 3HG973522.1n/an/a0
Chromosome 4HG973523.1n/an/a0
Chromosome 5HG973524.1n/an/a0
Chromosome 6HG973525.1n/an/a0
Chromosome 7HG973526.1n/an/a0
Chromosome 8HG973527.1n/an/a0
Chromosome 9HG973528.1n/an/a0
Chromosome 10HG973529.1n/an/a0
Chromosome 11HG973530.1n/an/a0
Chromosome 12HG973531.1n/an/a0
Chromosome 13HG973532.1n/an/a0
Chromosome 14HG973533.1n/an/a0
Chromosome 15HG973534.1n/an/a0
Chromosome 16HG973535.1n/an/a0
Chromosome 17HG973536.1n/an/a0
Chromosome 18HG973537.1n/an/a0
Chromosome 19HG973538.1n/an/a0
Chromosome 20HG973539.1n/an/a0
Chromosome 22HG973540.1n/an/a0
Chromosome 23HG973541.1n/an/a0
Chromosome 24HG973542.1n/an/a0
Chromosome 26HG973543.1n/an/a0
Chromosome 27HG973544.1n/an/a0
Chromosome 28HG973545.1n/an/a0
Chromosome 29HG973546.1n/an/a0
Chromosome SexHG973547.1n/an/a0
unplacedn/an/an/a79,822

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,877,559,61779,9421,458,373,485383,627141,187120
Chromosome 110,209,48298,369,1491,733,0537889
Chromosome 27,722,63386,052,2672,098,2835968
Chromosome 31,799,57661,489,350397,6281446
Chromosome 44,033,13663,184,294779,3773186
Chromosome 53,561,22862,637,5931,215,2962246
Chromosome 64,217,19743,348,5231,490,9703264
Chromosome 72,866,24862,189,645550,9032306
Chromosome 86,032,05365,072,2194,008,7884356
Chromosome 9134,6003108,08373,47663
Chromosome 103,874,43443,127,0152,203,5032714
Chromosome 111,994,27951,667,588532,4051365
Chromosome 124,498,338103,618,768593,75233410
Chromosome 13365,2291261,512365,129351
Chromosome 142,104,42141,566,9351,666,7071474
Chromosome 155,061,47234,010,0654,212,8123683
Chromosome 16855,5011743,738855,401751
Chromosome 174,855,22253,865,2292,579,0573385
Chromosome 183,093,29062,394,743828,6802286
Chromosome 195,158,28934,180,9284,091,4193743
Chromosome 201,276,5004861,565466,6681014
Chromosome 223,503,62432,785,6782,498,8722533
Chromosome 232,133,16131,638,8271,319,5481493
Chromosome 242,107,15211,584,1182,107,0521491
Chromosome 26562,5181458,006562,418421
Chromosome 272,016,93641,542,0511,497,4381654
Chromosome 281,279,59541,009,828961,397964
Chromosome 291,118,2553934,913911,627953
Chromosome Sex353,5191249,210353,419341
unplaced1,790,771,72979,8221,389,421,645335,777134,7300
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