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ASM3954117v1

Organism name:
Actinokineospora soli (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:17695
Infraspecific name:
Strain: JCM 17695
BioSample:
SAMD00645716
BioProject:
PRJDB10510
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2024/02/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_039541175.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
BAABFS01
Assembly method:
SOAPdenovo v. 2.04; SPAdes v. 3.13.0; Velvet v. 1.2.10; Platanus-b v. 1.2.792
Genome coverage:
55x
Sequencing technology:
MGISEQ-2000

IDs: 22560881 [UID] 58724038 [GenBank]

History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10023148 

Annotated by DFAST https://dfast.ddbj.nig.ac.jp/

Global statistics

Total sequence length6,700,056
Total ungapped length6,699,169
Gaps between scaffolds0
Number of scaffolds1,433
Scaffold N508,336
Scaffold L50228
Number of contigs1,442
Contig N508,202
Contig L50229
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,433

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,700,0561,4336,699,1698,33690

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinokineospora soliActinokineospora soli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014648415.1Actinokineospora fastidiosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.5554.3151.66

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected