U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM3954057v1

Organism name:
Pseudaeromonas paramecii (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Culture-collection: JCM:32226
Infraspecific name:
Strain: JCM 32226
BioSample:
SAMD00645696
BioProject:
PRJDB10510
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2024/02/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_039540575.1 (latest)
RefSeq assembly accession:
GCF_039540575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAABFC01
Assembly method:
SOAPdenovo v. 2.04; SPAdes v. 3.13.0; Velvet v. 1.2.10; Platanus-b v. 1.2.772
Genome coverage:
319x
Sequencing technology:
MGISEQ-2000

IDs: 22560691 [UID] 58723448 [GenBank] 58839528 [RefSeq]

History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10023095 

Annotated by DFAST https://dfast.ddbj.nig.ac.jp/

Global statistics

Total sequence length3,548,211
Total ungapped length3,548,088
Gaps between scaffolds0
Number of scaffolds36
Scaffold N50193,660
Scaffold L506
Number of contigs37
Contig N50193,660
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)36

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,548,211363,548,088193,66010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudaeromonas parameciiPseudaeromonas paramecii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000820165.1Aeromonas taiwanensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.1412.0210.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna