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ASM3954021v1

Organism name:
Streptomyces tremellae (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:30846
Infraspecific name:
Strain: JCM 30846
BioSample:
SAMD00645683
BioProject:
PRJDB10510
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2024/02/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_039540215.1 (latest)
RefSeq assembly accession:
GCF_039540215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAABEP01
Assembly method:
SOAPdenovo v. 2.04; SPAdes v. 3.13.0; Velvet v. 1.2.10; Platanus-b v. 1.2.759
Genome coverage:
30x
Sequencing technology:
MGISEQ-2000

IDs: 22560561 [UID] 58723078 [GenBank] 58843248 [RefSeq]

History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10023082 

Annotated by DFAST https://dfast.ddbj.nig.ac.jp/

Global statistics

Total sequence length7,461,242
Total ungapped length7,458,375
Gaps between scaffolds0
Number of scaffolds171
Scaffold N5096,914
Scaffold L5022
Number of contigs200
Contig N5071,331
Contig L5025
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)171

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,461,2421717,458,37596,914290

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces tremellaeStreptomyces tremellae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_021556455.1Streptomyces fuscigenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.4242.6949.97

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected