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ASM3953664v1

Organism name:
Streptomyces chiangmaiensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:16577
Infraspecific name:
Strain: JCM 16577
BioSample:
SAMD00645532
BioProject:
PRJDB10510
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2024/02/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_039536645.1 (latest)
RefSeq assembly accession:
GCF_039536645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAAAYZ01
Assembly method:
SOAPdenovo v. 2.04; SPAdes v. 3.13.0; Velvet v. 1.2.10; Platanus-b v. 1.2.608
Genome coverage:
86x
Sequencing technology:
MGISEQ-2000

IDs: 22558911 [UID] 58719448 [GenBank] 58840108 [RefSeq]

See Genome Information for Streptomyces chiangmaiensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10022206 

Annotated by DFAST https://dfast.ddbj.nig.ac.jp/

Global statistics

Total sequence length10,012,467
Total ungapped length10,010,585
Gaps between scaffolds0
Number of scaffolds374
Scaffold N5087,108
Scaffold L5036
Number of contigs422
Contig N5069,558
Contig L5042
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)374

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,012,46737410,010,58587,108480

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces chiangmaiensisStreptomyces chiangmaiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_036281785.1Streptomyces chiangmaiensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_036281785.1Streptomyces chiangmaiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9796.5999.61
Best-match type99.9796.5999.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna