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ASM2949001v1

Organism name:
Halobaculum limi (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: YSMS11
BioSample:
SAMN33577287
BioProject:
PRJNA940691
Submitter:
Jiangsu University
Date:
2023/03/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_029490015.1 (latest)
RefSeq assembly accession:
GCF_029490015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. March-2021
Expected final version:
no
Genome coverage:
446.85x
Sequencing technology:
PacBio Sequel

IDs: 16308421 [UID] 41820518 [GenBank] 41875158 [RefSeq]

See Genome Information for Halobaculum limi

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_029490015.1-RS_2024_06_17
Annotation Date::06/17/2024 02:39:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,527
CDSs (total)::3,473
Genes (coding)::3,448
CDSs (with protein)::3,448
Genes (RNA)::54
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::25
CDSs (without protein)::25
Pseudo Genes (ambiguous residues)::0 of 25
Pseudo Genes (frameshifted)::3 of 25
Pseudo Genes (incomplete)::22 of 25
Pseudo Genes (internal stop)::1 of 25
Pseudo Genes (multiple problems)::1 of 25
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,478,749
Total ungapped length3,478,749
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029490025.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP120468.1=NZ_CP120468.1
Plasmid unnamedCP120469.1=NZ_CP120469.1

Assembly statistics

MoleculeTotal
Length
All3,478,749
Chromosome 3,049,644
Plasmid unnamed429,105

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halobaculum limiHalobaculum limi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019823105.1Halobaculum magnesiiphilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.6838.3535.74

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected