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UGA_lav_v1

Organism name:
Lavandula angustifolia (lavender)
Infraspecific name:
Cultivar: Munstead
BioSample:
SAMN21435191
BioProject:
PRJNA762277
Submitter:
University of Georgia
Date:
2023/03/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028984105.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAPVEC01
Assembly method:
Canu v. v1.8
Expected final version:
yes
Genome coverage:
80.0x
Sequencing technology:
Oxford Nanopore MinION

IDs: 16071021 [UID] 41232138 [GenBank]

See Genome Information for Lavandula angustifolia

History (Show revision history)

Comment

Global statistics

Total sequence length795,075,733
Total ungapped length794,479,280
Gaps between scaffolds0
Number of scaffolds306
Scaffold N5031,371,815
Scaffold L5012
Number of contigs1,535
Contig N501,272,228
Contig L50178
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)306

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_028984875.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM054802.1n/an/a0
Chromosome 2CM054803.1n/an/a0
Chromosome 3CM054804.1n/an/a0
Chromosome 4CM054805.1n/an/a0
Chromosome 5CM054806.1n/an/a0
Chromosome 6CM054807.1n/an/a0
Chromosome 7CM054808.1n/an/a0
Chromosome 8CM054809.1n/an/a0
Chromosome 9CM054810.1n/an/a0
Chromosome 10CM054811.1n/an/a0
Chromosome 11CM054812.1n/an/a0
Chromosome 12CM054813.1n/an/a0
Chromosome 13CM054814.1n/an/a0
Chromosome 14CM054815.1n/an/a0
Chromosome 15CM054816.1n/an/a0
Chromosome 16CM054817.1n/an/a0
Chromosome 17CM054818.1n/an/a0
Chromosome 18CM054819.1n/an/a0
Chromosome 19CM054820.1n/an/a0
Chromosome 20CM054821.1n/an/a0
Chromosome 21CM054822.1n/an/a0
Chromosome 22CM054823.1n/an/a0
Chromosome 23CM054824.1n/an/a0
Chromosome 24CM054825.1n/an/a0
Chromosome 25CM054826.1n/an/a0
unplacedn/an/an/a281

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All795,075,733306794,479,28031,371,8151,2290
Chromosome 143,126,191143,094,07643,126,191690
Chromosome 240,247,195140,221,17240,247,195530
Chromosome 339,130,798139,107,29839,130,798470
Chromosome 437,478,350137,452,82737,478,350520
Chromosome 535,696,788135,677,26535,696,788400
Chromosome 635,319,141135,290,54935,319,141610
Chromosome 734,571,546134,543,00034,571,546590
Chromosome 833,582,212133,559,14333,582,212490
Chromosome 933,025,956133,003,45633,025,956450
Chromosome 1032,610,063132,587,04032,610,063470
Chromosome 1131,761,547131,733,52431,761,547570
Chromosome 1231,371,815131,342,81931,371,815580
Chromosome 1330,090,235130,058,22130,090,235610
Chromosome 1429,436,693129,413,19329,436,693470
Chromosome 1528,685,442128,660,94228,685,442490
Chromosome 1628,474,078128,457,03228,474,078360
Chromosome 1727,942,614127,924,09127,942,614380
Chromosome 1827,538,601127,513,57827,538,601510
Chromosome 1927,401,436127,378,86727,401,436480
Chromosome 2027,076,265127,057,76527,076,265370
Chromosome 2127,051,086127,027,47127,051,086520
Chromosome 2226,811,516126,793,51626,811,516360
Chromosome 2326,634,096126,615,07326,634,096390
Chromosome 2423,280,334123,261,24223,280,334420
Chromosome 2522,944,730122,931,18422,944,730290
unplaced13,787,00528113,774,93673,374270