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Chrysocyon_brachyurus_HiC

Organism name:
Chrysocyon brachyurus (maned wolf)
Isolate:
Sample0146
Sex:
male
BioSample:
SAMN16895755
BioProject:
PRJNA512907
Submitter:
DNA Zoo
Date:
2023/02/09
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028533335.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAQIGB01
Assembly method:
3D-DNA v. 2020; JBAT v. 2020 (see dnazoo.org/methods)
Expected final version:
yes
Genome coverage:
86x
Sequencing technology:
HiSeq X Ten; Illumina MiSeq; Illumina NovaSeq 6000

IDs: 15856161 [UID] 40700028 [GenBank]

See Genome Information for Chrysocyon brachyurus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,338,097,569
Total ungapped length2,328,184,969
Gaps between scaffolds0
Number of scaffolds120,371
Scaffold N5060,785,871
Scaffold L5015
Number of contigs157,193
Contig N5091,425
Contig L507,429
Total number of chromosomes and plasmids38
Number of component sequences (WGS or clone)120,371

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_028533365.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM052458.1n/an/a0
Chromosome 2CM052459.1n/an/a0
Chromosome 3CM052460.1n/an/a0
Chromosome 4CM052461.1n/an/a0
Chromosome 5CM052462.1n/an/a0
Chromosome 6CM052463.1n/an/a0
Chromosome 7CM052464.1n/an/a0
Chromosome 8CM052465.1n/an/a0
Chromosome 9CM052466.1n/an/a0
Chromosome 10CM052467.1n/an/a0
Chromosome 11CM052468.1n/an/a0
Chromosome 12CM052469.1n/an/a0
Chromosome 13CM052470.1n/an/a0
Chromosome 14CM052471.1n/an/a0
Chromosome 15CM052472.1n/an/a0
Chromosome 16CM052473.1n/an/a0
Chromosome 17CM052474.1n/an/a0
Chromosome 18CM052475.1n/an/a0
Chromosome 19CM052476.1n/an/a0
Chromosome 20CM052477.1n/an/a0
Chromosome 21CM052478.1n/an/a0
Chromosome 22CM052479.1n/an/a0
Chromosome 23CM052480.1n/an/a0
Chromosome 24CM052481.1n/an/a0
Chromosome 25CM052482.1n/an/a0
Chromosome 26CM052483.1n/an/a0
Chromosome 27CM052484.1n/an/a0
Chromosome 28CM052485.1n/an/a0
Chromosome 29CM052486.1n/an/a0
Chromosome 30CM052487.1n/an/a0
Chromosome 31CM052488.1n/an/a0
Chromosome 32CM052489.1n/an/a0
Chromosome 33CM052490.1n/an/a0
Chromosome 34CM052491.1n/an/a0
Chromosome 35CM052492.1n/an/a0
Chromosome 36CM052493.1n/an/a0
Chromosome 37CM052494.1n/an/a0
Chromosome 38CM052495.1n/an/a0
unplacedn/an/an/a120,333

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,338,097,569120,3712,328,184,96960,785,87136,8220
Chromosome 1117,154,6081116,637,508117,154,6081,8670
Chromosome 289,004,995188,634,09589,004,9951,3970
Chromosome 386,565,853186,234,85386,565,8531,3740
Chromosome 485,399,825185,071,32585,399,8251,2690
Chromosome 580,244,041179,901,44180,244,0411,2860
Chromosome 678,444,167178,113,56778,444,1671,2380
Chromosome 774,265,272173,970,47274,265,2721,1480
Chromosome 870,965,392170,653,59270,965,3921,1740
Chromosome 970,234,150169,958,35070,234,1501,0700
Chromosome 1069,244,872168,933,77269,244,8721,1310
Chromosome 1167,630,315167,342,11567,630,3151,1180
Chromosome 1261,729,570161,457,57061,729,5701,0280
Chromosome 1361,439,486161,186,08661,439,4869700
Chromosome 1460,785,871160,513,77160,785,8719370
Chromosome 1559,474,367159,242,96759,474,3678620
Chromosome 1658,504,184158,267,48458,504,1848470
Chromosome 1757,984,583157,752,28357,984,5839950
Chromosome 1856,296,469156,075,36956,296,4699190
Chromosome 1953,842,738153,627,63853,842,7388310
Chromosome 2053,818,776153,577,97653,818,7768960
Chromosome 2152,751,438152,520,63852,751,4389040
Chromosome 2251,444,953151,211,35351,444,9538280
Chromosome 2350,814,665150,592,26550,814,6658040
Chromosome 2449,534,620149,327,82049,534,6207680
Chromosome 2547,712,893147,483,69347,712,8938440
Chromosome 2645,788,688145,589,48845,788,6887520
Chromosome 2743,685,519143,495,91943,685,5197080
Chromosome 2840,996,501140,826,00140,996,5016330
Chromosome 2940,032,456139,852,55640,032,4566390
Chromosome 3039,761,632139,575,43239,761,6326860
Chromosome 3138,978,113138,822,81338,978,1136050
Chromosome 3238,104,447137,933,24738,104,4476240
Chromosome 3337,283,930137,112,33037,283,9305800
Chromosome 3435,781,974135,616,77435,781,9746240
Chromosome 3530,543,062130,416,46230,543,0624780
Chromosome 3629,962,562129,841,06229,962,5624470
Chromosome 3725,851,948125,739,64825,851,9484230
Chromosome 38108,315,2531107,439,553108,315,2532,7090
unplaced117,723,381120,333117,635,6813,8344090