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bRisTri1.mat.cur.20221130

Organism name:
Rissa tridactyla (black-legged kittiwake)
Isolate:
bRisTri1
Sex:
female
BioSample:
SAMN32104255
BioProject:
PRJNA909854
Submitter:
Vertebrate Genomes Project
Date:
2023/02/10
Assembly type:
haploid (maternal haplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_028501385.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAPUFH01
Assembly method:
hifiasm v. 0.16.1+galaxy2; Bionano Solve v. 3.7.0+galaxy0; SALSA2 v. 2.3+galaxy2
Expected final version:
no
Genome coverage:
33.0x
Sequencing technology:
PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2
Linked assembly:
GCA_028500815.1 (paternal haplotype of diploid)

IDs: 15866121 [UID] 40722238 [GenBank]

See Genome Information for Rissa tridactyla

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,268,441,171
Total ungapped length1,267,801,299
Gaps between scaffolds0
Number of scaffolds733
Scaffold N5082,691,832
Scaffold L505
Number of contigs956
Contig N5018,169,445
Contig L5022
Total number of chromosomes and plasmids30
Number of component sequences (WGS or clone)733

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_028501395.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM052030.1n/an/a0
Chromosome 2CM052031.1n/an/a0
Chromosome 3CM052032.1n/an/a0
Chromosome 4CM052033.1n/an/a1
Chromosome 5CM052034.1n/an/a0
Chromosome 6CM052035.1n/an/a0
Chromosome 7CM052036.1n/an/a0
Chromosome 8CM052037.1n/an/a0
Chromosome 9CM052038.1n/an/a0
Chromosome 10CM052039.1n/an/a0
Chromosome 11CM052040.1n/an/a1
Chromosome 12CM052041.1n/an/a0
Chromosome 13CM052042.1n/an/a0
Chromosome 14CM052043.1n/an/a0
Chromosome 15CM052044.1n/an/a0
Chromosome 16CM052045.1n/an/a0
Chromosome 17CM052046.1n/an/a0
Chromosome 18CM052047.1n/an/a0
Chromosome 19CM052048.1n/an/a0
Chromosome 20CM052049.1n/an/a0
Chromosome 21CM052050.1n/an/a0
Chromosome 22CM052051.1n/an/a0
Chromosome 23CM052052.1n/an/a0
Chromosome 24CM052053.1n/an/a3
Chromosome 25CM052054.1n/an/a2
Chromosome 26CM052055.1n/an/a0
Chromosome 27CM052056.1n/an/a8
Chromosome 28CM052057.1n/an/a0
Chromosome 29CM052058.1n/an/a2
Chromosome WCM052059.1n/an/a1
unplacedn/an/an/a685

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule1,268,441,1717331,267,801,29982,691,8322230
Chromosome 1Assembled molecule218,212,6131218,179,241218,212,613220
Chromosome 2Assembled molecule169,938,8901169,831,470169,938,890220
Chromosome 3Assembled molecule127,362,2081127,278,240127,362,20870
Chromosome 4AllAssembled moleculeUnlocalized scaffolds95,493,17294,852,507640,66521195,487,41794,846,752640,66594,852,50794,852,507640,665770000
Chromosome 5Assembled molecule82,691,832182,678,41582,691,83260
Chromosome 6Assembled molecule73,851,571173,850,02373,851,57160
Chromosome 7Assembled molecule57,349,580157,348,12357,349,58050
Chromosome 8Assembled molecule56,289,734156,213,86356,289,73470
Chromosome 9Assembled molecule49,133,128149,132,00249,133,12860
Chromosome 10Assembled molecule26,498,100126,497,70026,498,10020
Chromosome 11AllAssembled moleculeUnlocalized scaffolds23,541,76022,636,231905,52921123,541,24522,635,716905,52922,636,23122,636,231905,529110000
Chromosome 12Assembled molecule19,373,366119,372,40519,373,36630
Chromosome 13Assembled molecule17,559,535117,558,73517,559,53540
Chromosome 14Assembled molecule14,836,496114,836,49614,836,49600
Chromosome 15Assembled molecule15,296,241115,295,64115,296,24130
Chromosome 16Assembled molecule9,802,01019,798,8239,802,01070
Chromosome 17Assembled molecule9,091,33219,084,4259,091,33250
Chromosome 18Assembled molecule8,956,56818,955,1608,956,56830
Chromosome 19Assembled molecule8,517,59018,510,6338,517,59060
Chromosome 20Assembled molecule7,646,72917,634,4137,646,72990
Chromosome 21Assembled molecule7,973,67017,953,1097,973,67070
Chromosome 22Assembled molecule6,656,92816,651,1876,656,92870
Chromosome 23Assembled molecule4,031,05913,961,9154,031,05960
Chromosome 24AllAssembled moleculeUnlocalized scaffolds2,933,6101,320,2061,613,4044132,929,6101,320,2061,609,404673,8171,320,206481,359808000
Chromosome 25AllAssembled moleculeUnlocalized scaffolds2,054,0371,734,153319,8843122,049,9371,732,053317,8841,734,1531,734,153189,7661064000
Chromosome 26Assembled molecule1,323,51011,323,5101,323,51000
Chromosome 27AllAssembled moleculeUnlocalized scaffolds1,644,335582,8151,061,5209181,638,935580,9151,058,020456,986582,815265,8161257000
Chromosome 28Assembled molecule208,2281207,828208,22820
Chromosome 29AllAssembled moleculeUnlocalized scaffolds343,508295,44948,059312342,308294,24948,059295,449295,44925,940330000
Chromosome WAllAssembled moleculeUnlocalized scaffolds31,970,39231,882,72387,66921131,912,96231,825,29387,66931,882,72331,882,72387,66922220000
unplacedAssembled molecule117,859,439685117,745,528364,629150