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LboTFB7829_1

Organism name:
Lentinula detonsa (basidiomycete fungi)
Infraspecific name:
Strain: TFB7829
BioSample:
SAMN12811780
BioProject:
PRJNA572474
Submitter:
DOE Joint Genome Institute
Date:
2023/01/17
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_027886465.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JANVFF01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
no
Genome coverage:
237.001183x
Sequencing technology:
Illumina

IDs: 15505011 [UID] 39890488 [GenBank]

See Genome Information for Lentinula detonsa

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- https://mycocosm.jgi.doe.gov/LboTFB7829_1
JGI Project ID: 1129961
The DNA was provided by David S. Hibbett (DHibbett@clarku.edu)
The strain is available from David S. Hibbett
Contacts: Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution and use of ... large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
The organism name was updated to Lentinula detonsa in July 2023  more

Global statistics

Total sequence length33,642,804
Total ungapped length33,637,251
Gaps between scaffolds0
Number of scaffolds1,807
Scaffold N5080,093
Scaffold L50120
Number of contigs1,869
Contig N5077,370
Contig L50122
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,869

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced33,642,8041,80733,637,25180,093620