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ASM2788624v1

Organism name:
Mycolicibacterium holsaticum DSM 44478 = JCM 12374 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 44478
BioSample:
SAMN32724496
BioProject:
PRJNA173678
Submitter:
Uppasala Univeristy & Jawaharlal Nehru University
Date:
2023/01/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_027886245.1 (latest)
RefSeq assembly accession:
GCF_027886245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ANBR01
Assembly method:
SOAPdenvo v. 1.5
Expected final version:
no
Genome coverage:
100x
Sequencing technology:
Illumina HiSeq

IDs: 15445141 [UID] 39729608 [GenBank] 39744168 [RefSeq]

See Genome Information for Mycolicibacterium holsaticum

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::10/25/2013 14:03:33
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.2 (rev. 415875)
Genes::5,360
CDS::5,245
Pseudo Genes::64
rRNAs::4 (5S, 16S, 23S)
tRNAs::46
ncRNA::1
Frameshifted Genes::43
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,603,737
Total ungapped length5,603,737
Number of contigs45
Contig N50529,605
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,603,737455,603,737529,60500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycolicibacterium holsaticum DSM 44478 = JCM 12374Mycolicibacterium holsaticum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019645835.1Mycolicibacterium holsaticum DSM 44478 = JCM 12374type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019645835.1Mycolicibacterium holsaticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9799.61
Best-match type99.9999.9799.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna