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bAcrTri1.pri

Organism name:
Acridotheres tristis (common myna)
Isolate:
bArcTri1
Sex:
female
BioSample:
SAMN28454388
BioProject:
PRJNA839507
Submitter:
Vertebrate Genomes Project
Date:
2023/01/09
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_027559615.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAPZMO01
Assembly method:
Hifiasm v. 0.15.4 + galaxy0; purge_dups v. 1.2.5 + galaxy3; Bionano solve v. 3.7.0 + galaxy0; salsa v. 2.3 + galaxy2
Expected final version:
no
Genome coverage:
25.0x
Sequencing technology:
PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Genomics Hi-C v2
Linked assembly:
GCA_027559525.1 (alternate pseudohaplotype of diploid)

IDs: 15255821 [UID] 39302148 [GenBank]

See Genome Information for Acridotheres tristis

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,193,419,045
Total ungapped length1,190,996,522
Gaps between scaffolds0
Number of scaffolds455
Scaffold N5075,254,055
Scaffold L506
Number of contigs890
Contig N507,308,823
Contig L5044
Total number of chromosomes and plasmids39
Number of component sequences (WGS or clone)455

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_027560415.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM050531.1n/an/a0
Chromosome 2CM050532.1n/an/a0
Chromosome 3CM050533.1n/an/a0
Chromosome 4CM050534.1n/an/a0
Chromosome 5CM050535.1n/an/a0
Chromosome 6CM050536.1n/an/a0
Chromosome 7CM050537.1n/an/a0
Chromosome 8CM050538.1n/an/a0
Chromosome 9CM050539.1n/an/a0
Chromosome 10CM050540.1n/an/a0
Chromosome 11CM050541.1n/an/a0
Chromosome 12CM050542.1n/an/a0
Chromosome 13CM050543.1n/an/a0
Chromosome 14CM050544.1n/an/a0
Chromosome 15CM050545.1n/an/a0
Chromosome 16CM050546.1n/an/a0
Chromosome 17CM050547.1n/an/a0
Chromosome 18CM050548.1n/an/a0
Chromosome 19CM050549.1n/an/a0
Chromosome 20CM050550.1n/an/a0
Chromosome 21CM050551.1n/an/a0
Chromosome 22CM050552.1n/an/a0
Chromosome 23CM050553.1n/an/a0
Chromosome 24CM050554.1n/an/a0
Chromosome 25CM050555.1n/an/a0
Chromosome 26CM050556.1n/an/a0
Chromosome 27CM050557.1n/an/a0
Chromosome 28CM050558.1n/an/a1
Chromosome 29CM050559.1n/an/a1
Chromosome 30CM050560.1n/an/a0
Chromosome 31CM050561.1n/an/a15
Chromosome 32CM050562.1n/an/a9
Chromosome 33CM050563.1n/an/a5
Chromosome 34CM050564.1n/an/a2
Chromosome 35CM050565.1n/an/a3
Chromosome 36CM050566.1n/an/a5
Chromosome 37CM050567.1n/an/a3
Chromosome ZCM050568.1n/an/a0
unplacedn/an/an/a372

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,193,400,3914541,190,977,86875,254,0554350
Chromosome 1Assembled molecule156,254,6681156,056,171156,254,668490
Chromosome 2Assembled molecule118,314,5221117,942,039118,314,522250
Chromosome 3Assembled molecule117,450,7561117,360,474117,450,756320
Chromosome 4Assembled molecule77,303,064177,286,71677,303,064210
Chromosome 5Assembled molecule75,254,055175,172,15275,254,055210
Chromosome 6Assembled molecule40,592,337140,584,52740,592,33790
Chromosome 7Assembled molecule38,453,966138,451,17738,453,96670
Chromosome 8Assembled molecule31,403,467131,402,35431,403,46750
Chromosome 9Assembled molecule25,945,318125,938,72425,945,31850
Chromosome 10Assembled molecule24,022,508124,019,89824,022,50880
Chromosome 11Assembled molecule22,422,250122,420,69322,422,25060
Chromosome 12Assembled molecule22,231,283122,230,97922,231,28320
Chromosome 13Assembled molecule22,118,221121,529,36522,118,22120
Chromosome 14Assembled molecule21,078,770121,070,30521,078,77030
Chromosome 15Assembled molecule20,768,029120,764,52920,768,029100
Chromosome 16Assembled molecule17,535,538117,532,38317,535,53860
Chromosome 17Assembled molecule15,624,977115,621,94815,624,97740
Chromosome 18Assembled molecule14,889,597114,883,82314,889,59760
Chromosome 19Assembled molecule14,470,884114,467,49114,470,88440
Chromosome 20Assembled molecule14,299,147114,298,63414,299,14720
Chromosome 21Assembled molecule11,461,502111,459,71311,461,50220
Chromosome 22Assembled molecule11,319,181111,303,80111,319,18120
Chromosome 23Assembled molecule8,972,61418,970,9888,972,61470
Chromosome 24Assembled molecule8,275,02718,264,0278,275,02780
Chromosome 25Assembled molecule7,991,65217,932,6537,991,65240
Chromosome 26Assembled molecule7,060,83417,057,4347,060,834110
Chromosome 27Assembled molecule6,896,26716,891,7536,896,267110
Chromosome 28AllAssembled moleculeUnlocalized scaffolds6,799,4136,770,22829,1852116,793,7136,764,52829,1856,770,2286,770,22829,18515150000
Chromosome 29AllAssembled moleculeUnlocalized scaffolds6,208,6286,121,83786,7912116,180,9256,094,13486,7916,121,8376,121,83786,79118180000
Chromosome 30Assembled molecule2,825,97112,716,1542,825,971150
Chromosome 31AllAssembled moleculeUnlocalized scaffolds1,707,093888,662818,431161151,700,793884,362816,431888,662888,66279,14815114000
Chromosome 32AllAssembled moleculeUnlocalized scaffolds567,605117,015450,5901019565,105116,515448,590110,750117,015110,750514000
Chromosome 33AllAssembled moleculeUnlocalized scaffolds476,751249,621227,130615473,751247,121226,630249,621249,62148,276651000
Chromosome 34AllAssembled moleculeUnlocalized scaffolds442,284292,492149,792312439,284289,992149,292292,492292,49283,754651000
Chromosome 35AllAssembled moleculeUnlocalized scaffolds416,718189,193227,525413414,218187,693226,525133,101189,193133,101532000
Chromosome 36AllAssembled moleculeUnlocalized scaffolds277,54870,494207,054615277,54870,494207,05442,88870,49442,888000000
Chromosome 37AllAssembled moleculeUnlocalized scaffolds218,56797,368121,199413217,56796,868120,69969,10897,36869,108211000
Chromosome ZAssembled molecule111,071,2041110,644,826111,071,204640
unplacedAssembled molecule109,978,175372109,639,233663,736120
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT18,654118,65418,65400