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icDioElon1.1

Organism name:
Diorhabda elongata (beetles)
Isolate:
Crete
Sex:
male
BioSample:
SAMN24036813
BioProject:
PRJNA788886
Submitter:
United States Department of Agriculture
Date:
2022/11/18
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_026230145.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAOVVJ01
Assembly method:
HiFiAdapterFilt v. 2.0.0; HiFiASM v. 0.16.1; YaHS v. 1.1; Juicebox v. 1.11.08
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
PacBio Sequel
Linked assembly:
GCA_026230125.1 (alternate pseudohaplotype of diploid)

IDs: 14441261 [UID] 37466328 [GenBank]

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length485,337,276
Total ungapped length485,331,719
Gaps between scaffolds0
Number of scaffolds277
Scaffold N5039,189,703
Scaffold L506
Number of contigs334
Contig N5011,993,826
Contig L5015
Total number of chromosomes and plasmids13
Number of component sequences (WGS or clone)277

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_026230155.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM047926.1n/an/a0
Chromosome 2CM047927.1n/an/a0
Chromosome 3CM047928.1n/an/a0
Chromosome 4CM047929.1n/an/a0
Chromosome 5CM047930.1n/an/a0
Chromosome 6CM047931.1n/an/a0
Chromosome 7CM047932.1n/an/a0
Chromosome 8CM047933.1n/an/a0
Chromosome 9CM047934.1n/an/a0
Chromosome 10CM047935.1n/an/a0
Chromosome 11CM047936.1n/an/a0
Chromosome XCM047937.1n/an/a0
Chromosome YCM047938.1n/an/a0
unplacedn/an/an/a264

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All485,337,276277485,331,71939,189,703570
Chromosome 147,560,882147,560,48247,560,88240
Chromosome 243,806,705143,806,30543,806,70540
Chromosome 341,542,721141,542,32141,542,72140
Chromosome 440,345,139140,344,53940,345,13960
Chromosome 539,189,703139,189,40339,189,70330
Chromosome 635,332,557135,331,55735,332,557100
Chromosome 734,576,843134,576,64334,576,84320
Chromosome 834,174,733134,174,33334,174,73340
Chromosome 933,623,824133,623,72433,623,82410
Chromosome 1026,592,397126,592,27126,592,39720
Chromosome 1124,225,885124,225,28524,225,88560
Chromosome X43,700,691143,699,89143,700,69180
Chromosome Y8,491,01018,490,8108,491,01020
unplaced32,174,18626432,174,155390,75810