U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2616766v1

Organism name:
Streptomyces drozdowiczii (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MDA8-470
BioSample:
SAMN28693308
BioProject:
PRJNA842922
Submitter:
Newcastle University
Date:
2022/11/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_026167665.1 (latest)
RefSeq assembly accession:
GCF_026167665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
250x
Sequencing technology:
PacBio

IDs: 14401181 [UID] 37373808 [GenBank] 37436158 [RefSeq]

See Genome Information for Streptomyces drozdowiczii

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/27/2023 11:58:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,708
CDSs (total)::6,621
Genes (coding)::6,049
CDSs (with protein)::6,049
Genes (RNA)::87
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::572
CDSs (without protein)::572
Pseudo Genes (ambiguous residues)::0 of 572
Pseudo Genes (frameshifted)::481 of 572
Pseudo Genes (incomplete)::126 of 572
Pseudo Genes (internal stop)::14 of 572
Pseudo Genes (multiple problems)::42 of 572
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,386,614
Total ungapped length7,386,614
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_026167675.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP098740.1=NZ_CP098740.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,386,614

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces drozdowicziiStreptomyces drozdowiczii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001313325.1Streptomyces drozdowiczii JCM 13580suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001313325.1Streptomyces drozdowicziisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type93.0528.4767.06
Best-match type93.0528.4767.06

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna