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ASM2550650v1

Organism name:
Flaveria sonorensis (eudicots)
Isolate:
c2018M-1
BioSample:
SAMN14943595
BioProject:
PRJNA633414
Submitter:
Partner Insitute for Computational BIology, Shanghai Institutes for Biological Sciences
Date:
2022/10/02
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_025506505.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACCIY01
Assembly method:
Canu v. 01-JAN-2020
Expected final version:
yes
Genome coverage:
98x
Sequencing technology:
PacBio; Illumina HiSeq

IDs: 14025401 [UID] 36440618 [GenBank]

See Genome Information for Flaveria sonorensis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length1,242,098,486
Total ungapped length1,241,894,486
Gaps between scaffolds0
Number of scaffolds1,793
Scaffold N5065,423,311
Scaffold L509
Number of contigs3,833
Contig N501,035,914
Contig L50288
Total number of chromosomes and plasmids18
Number of component sequences (WGS or clone)1,793

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_025506765.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM046423.1n/an/a0
Chromosome 2CM046424.1n/an/a0
Chromosome 3CM046425.1n/an/a0
Chromosome 4CM046426.1n/an/a0
Chromosome 5CM046427.1n/an/a0
Chromosome 6CM046428.1n/an/a0
Chromosome 7CM046429.1n/an/a0
Chromosome 8CM046430.1n/an/a0
Chromosome 9CM046431.1n/an/a0
Chromosome 10CM046432.1n/an/a0
Chromosome 11CM046433.1n/an/a0
Chromosome 12CM046434.1n/an/a0
Chromosome 13CM046435.1n/an/a0
Chromosome 14CM046436.1n/an/a0
Chromosome 15CM046437.1n/an/a0
Chromosome 16CM046438.1n/an/a0
Chromosome 17CM046439.1n/an/a0
Chromosome 18CM046440.1n/an/a0
unplacedn/an/an/a1,775

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,242,098,4861,7931,241,894,48665,423,3112,0400
Chromosome 173,202,040173,194,04073,202,040800
Chromosome 270,114,838170,105,53870,114,838930
Chromosome 357,524,691157,518,99157,524,691570
Chromosome 451,231,838151,221,93851,231,838990
Chromosome 565,423,311165,414,71165,423,311860
Chromosome 653,042,512153,034,81253,042,512770
Chromosome 755,299,920155,296,32055,299,920360
Chromosome 853,377,191153,372,79153,377,191440
Chromosome 948,736,507148,729,90748,736,507660
Chromosome 1084,284,792184,266,39284,284,7921840
Chromosome 1179,332,261179,318,76179,332,2611350
Chromosome 1265,865,623165,843,52365,865,6232210
Chromosome 1365,544,848165,528,74865,544,8481610
Chromosome 1461,282,185161,270,88561,282,1851130
Chromosome 1575,882,104175,866,50475,882,1041560
Chromosome 1654,489,374154,478,97454,489,3741040
Chromosome 1749,896,849149,884,04949,896,8491280
Chromosome 1878,092,098178,072,09878,092,0982000
unplaced99,475,5041,77599,475,50459,85000