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ASM2434725v1

Organism name:
Amphritea atlantica (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 14776
BioSample:
SAMD00425494
BioProject:
PRJDB12633
Submitter:
Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University
Date:
2022/07/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_024347255.1 (latest)
RefSeq assembly accession:
GCF_024347255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.8
Genome coverage:
324x
Sequencing technology:
Illumina MiSeq and Nanopore

IDs: 13323181 [UID] 34790098 [GenBank] 36400328 [RefSeq]

See Genome Information for Amphritea atlantica

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_024347255.1-RS_2024_03_28
Annotation Date::03/28/2024 07:34:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,434
CDSs (total)::4,333
Genes (coding)::4,321
CDSs (with protein)::4,321
Genes (RNA)::101
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::73
ncRNAs::13
Pseudo Genes (total)::12
CDSs (without protein)::12
Pseudo Genes (ambiguous residues)::0 of 12
Pseudo Genes (frameshifted)::6 of 12
Pseudo Genes (incomplete)::9 of 12
Pseudo Genes (internal stop)::3 of 12
Pseudo Genes (multiple problems)::5 of 12
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,804,482
Total ungapped length4,804,482
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024347265.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP025284.1=NZ_AP025284.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,804,482

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Amphritea atlanticaAmphritea atlantica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900111095.1Amphritea atlanticatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900111095.1Amphritea atlanticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9898.3599.95
Best-match type99.9898.3599.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna