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ASM2422799v1

Organism name:
Halomicrococcus gelatinilyticus (euryarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: GSLN9
BioSample:
SAMN29438988
BioProject:
PRJNA854382
Submitter:
Jiangsu University
Date:
2022/07/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_024227995.1 (latest)
RefSeq assembly accession:
GCF_024227995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. May-2018
Expected final version:
no
Genome coverage:
135.0x
Sequencing technology:
PacBio

IDs: 13255891 [UID] 34629988 [GenBank] 53171348 [RefSeq]

See Genome Information for Halomicrococcus gelatinilyticus

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/25/2024 10:40:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,841
CDSs (total)::3,785
Genes (coding)::3,764
CDSs (with protein)::3,764
Genes (RNA)::56
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::2
Pseudo Genes (total)::21
CDSs (without protein)::21
Pseudo Genes (ambiguous residues)::0 of 21
Pseudo Genes (frameshifted)::10 of 21
Pseudo Genes (incomplete)::17 of 21
Pseudo Genes (internal stop)::2 of 21
Pseudo Genes (multiple problems)::8 of 21
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,721,977
Total ungapped length3,721,977
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024228025.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP100465.1=NZ_CP100465.1
Plasmid unnamed1CP100466.1=NZ_CP100466.1
Plasmid unnamed2CP100467.1=NZ_CP100467.1
Plasmid unnamed3CP100468.1=NZ_CP100468.1

Assembly statistics

MoleculeTotal
Length
All3,721,977
Chromosome 2,870,650
Plasmid unnamed1412,702
Plasmid unnamed2358,865
Plasmid unnamed379,760

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halomicrococcus gelatinilyticusHalomicrococcus gelatinilyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003369835.1Halorussus rarustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.5818.0115.33

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna