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ASM2417816v1

Organism name:
Halohasta salina (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: GSL13
BioSample:
SAMN29428005
BioProject:
PRJNA854308
Submitter:
Jiangsu University
Date:
2022/07/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_024178165.1 (latest)
RefSeq assembly accession:
GCF_024178165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAMZIE01
Assembly method:
ABySS v. 2013-10
Expected final version:
no
Genome coverage:
310.0x
Sequencing technology:
Illumina HiSeq

IDs: 13221701 [UID] 34548468 [GenBank] 34591288 [RefSeq]

See Genome Information for Halohasta salina

History (Show revision history)

Comment

Global statistics

Total sequence length3,041,226
Total ungapped length3,041,226
Number of contigs25
Contig N50497,671
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,041,226253,041,226497,67100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halohasta salinaHalohasta salina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024494645.1Halohasta litoreatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.9252.7142.07

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected