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ASM2369947v1

Organism name:
Halomarina rubra (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: ZS-47-S
BioSample:
SAMN27867787
BioProject:
PRJNA832571
Submitter:
Jiangsu University
Date:
2022/06/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_023699475.1 (latest)
RefSeq assembly accession:
GCF_023699475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JALXFV01
Assembly method:
SOAPdenovo v. 2
Expected final version:
no
Genome coverage:
251.0x
Sequencing technology:
Illumina

IDs: 12938481 [UID] 33799608 [GenBank] 33810468 [RefSeq]

See Genome Information for Halomarina rubra

History (Show revision history)

Comment

Global statistics

Total sequence length4,068,489
Total ungapped length4,067,544
Gaps between scaffolds0
Number of scaffolds16
Scaffold N50746,529
Scaffold L503
Number of contigs47
Contig N50150,211
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)16

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,068,489164,067,544746,529310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halomarina rubraHalomarina rubra

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009791395.1Halomarina oriensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.4853.3953.37

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected