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ASM2355964v1

Organism name:
Aggregatibacter actinomycetemcomitans (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 29522
BioSample:
SAMN21895069
BioProject:
PRJNA767258
Submitter:
University of Groningen, University Medical Center Groningen
Date:
2022/05/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_023559645.1 (latest)
RefSeq assembly accession:
GCF_023559645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAJHPH01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
80x
Sequencing technology:
Illumina MiSeq

IDs: 12863751 [UID] 33585028 [GenBank] 33602488 [RefSeq]

See Genome Information for Aggregatibacter actinomycetemcomitans

There are 187 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,121,926
Total ungapped length2,121,926
Number of contigs28
Contig N50125,983
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,121,926282,121,926125,98300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aggregatibacter actinomycetemcomitansAggregatibacter actinomycetemcomitans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000372365.1Aggregatibacter actinomycetemcomitans DSM 8324type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000372365.1Aggregatibacter actinomycetemcomitanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0692.4794.07
Best-match type99.0692.4794.07

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna