U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2350929v1

Organism name:
Corynebacterium pseudodiphtheriticum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PC1130
BioSample:
SAMN24898280
BioProject:
PRJNA541851
Submitter:
Divison of Bacterial Diseases, Centers for Disease Control
Date:
2022/05/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_023509295.1 (latest)
RefSeq assembly accession:
GCF_023509295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
FLYE v. unspecified
Genome coverage:
901x
Sequencing technology:
PacBio Sequel II; Illumina MiSeq

IDs: 12792801 [UID] 33421618 [GenBank] 33434348 [RefSeq]

See Genome Information for Corynebacterium pseudodiphtheriticum

There are 69 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/26/2023 04:38:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,111
CDSs (total)::2,053
Genes (coding)::2,019
CDSs (with protein)::2,019
Genes (RNA)::58
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::34
CDSs (without protein)::34
Pseudo Genes (ambiguous residues)::0 of 34
Pseudo Genes (frameshifted)::15 of 34
Pseudo Genes (incomplete)::25 of 34
Pseudo Genes (internal stop)::2 of 34
Pseudo Genes (multiple problems)::7 of 34
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,362,766
Total ungapped length2,362,766
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023509305.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP091864.1=NZ_CP091864.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,362,766

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium pseudodiphtheriticumCorynebacterium pseudodiphtheriticum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000688415.1Corynebacterium pseudodiphtheriticum DSM 44287type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000688415.1Corynebacterium pseudodiphtheriticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.7788.7592.74
Best-match type95.7788.7592.74

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna