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ASM2280975v1

Organism name:
Lactococcus lactis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SCB469
BioSample:
SAMN27009659
BioProject:
PRJNA820483
Submitter:
South China Agricultural University
Date:
2022/04/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_022809755.1 (latest)
RefSeq assembly accession:
GCF_022809755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
flye v. 2.6; pilon v. 1.23
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Nanopore

IDs: 12445811 [UID] 32576218 [GenBank] 32594398 [RefSeq]

See Genome Information for Lactococcus lactis

There are 699 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/18/2023 06:31:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,815
CDSs (total)::2,728
Genes (coding)::2,637
CDSs (with protein)::2,637
Genes (RNA)::87
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::64
ncRNAs::4
Pseudo Genes (total)::91
CDSs (without protein)::91
Pseudo Genes (ambiguous residues)::0 of 91
Pseudo Genes (frameshifted)::48 of 91
Pseudo Genes (incomplete)::36 of 91
Pseudo Genes (internal stop)::21 of 91
Pseudo Genes (multiple problems)::14 of 91
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,711,219
Total ungapped length2,711,219
Total number of chromosomes and plasmids5

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_022809765.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP094474.1=NZ_CP094474.1
Plasmid unnamed1CP094475.1=NZ_CP094475.1
Plasmid unnamed2CP094476.1=NZ_CP094476.1
Plasmid unnamed3CP094477.1=NZ_CP094477.1
Plasmid unnamed4CP094478.1=NZ_CP094478.1

Assembly statistics

MoleculeTotal
Length
All2,711,219
Chromosome 2,457,093
Plasmid unnamed175,968
Plasmid unnamed272,830
Plasmid unnamed358,234
Plasmid unnamed447,094

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactococcus lactisLactococcus lactis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016028835.1Lactococcus lactistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016028835.1Lactococcus lactistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8480.0684.23
Best-match type98.8480.0684.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna