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g4wRepeats_chr_ref_UCLA

Organism name:
Schmidtea mediterranea (freshwater planarian)
Isolate:
S2
Sex:
male and female
BioSample:
SAMN19275626
BioProject:
PRJNA731187
Submitter:
University of California, Los Angeles
Date:
2022/03/10
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_022537955.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAKGRZ01
Assembly method:
JuiceBox v. 1.9.8
Expected final version:
yes
Reference guided assembly:
GCA_002600895.1
Genome coverage:
30.0x
Sequencing technology:
Illumina HiSeq

IDs: 12303431 [UID] 32222038 [GenBank]

See Genome Information for Schmidtea mediterranea

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length773,974,862
Total ungapped length773,867,583
Gaps between scaffolds0
Number of scaffolds147
Scaffold N50262,873,270
Scaffold L502
Number of contigs1,312
Contig N501,113,910
Contig L50203
Total number of chromosomes and plasmids4
Number of component sequences (WGS or clone)147

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_022537965.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM039679.1n/an/a0
Chromosome 2CM039680.1n/an/a0
Chromosome 3CM039681.1n/an/a0
Chromosome 4CM039682.1n/an/a0
unplacedn/an/an/a143

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All773,974,862147773,867,583262,873,2701,1650
Chromosome 1328,863,7201328,810,341328,863,7205840
Chromosome 2262,873,2701262,840,020262,873,2703580
Chromosome 3118,644,2251118,629,500118,644,2251570
Chromosome 446,265,561146,260,33646,265,561590
unplaced17,328,08614317,327,386145,55470