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DVS_A1.0

Organism name:
Citrus sinensis (sweet orange)
Infraspecific name:
Cultivar: Valencia sweet orange
BioSample:
SAMN19611724
BioProject:
PRJNA736174
Submitter:
Clemson University
Date:
2022/02/11
Assembly type:
haploid (principal pseudohaplotype of diploid)
Release type:
minor
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_022201045.1 (latest)
RefSeq assembly accession:
GCF_022201045.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes MT and Pltd
  • Data displayed for RefSeq version
WGS Project:
JAHMIS01
Assembly method:
FALCON-Unzip v. 2.0; CANU v. 2.0
Expected final version:
yes
Genome coverage:
117x
Sequencing technology:
PacBio Sequel II
Linked assembly:
GCA_022201065.1 (alternate pseudohaplotype of diploid)

IDs: 12122341 [UID] 31782828 [GenBank] 37928618 [RefSeq]

See Genome Information for Citrus sinensis

There are 16 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length299,778,546
Total ungapped length299,778,546
Total number of chromosomes and plasmids11

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_022201055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM039161.1=NC_068556.1
Chromosome 2CM039162.1=NC_068557.1
Chromosome 3CM039163.1=NC_068558.1
Chromosome 4CM039164.1=NC_068559.1
Chromosome 5CM039165.1=NC_068560.1
Chromosome 6CM039166.1=NC_068561.1
Chromosome 7CM039167.1=NC_068562.1
Chromosome 8CM039168.1=NC_068563.1
Chromosome 9CM039169.1=NC_068564.1

Assembly statistics

MoleculeTotal
Length
All298,977,511
Chromosome 124,849,987
Chromosome 232,942,340
Chromosome 352,308,633
Chromosome 429,627,743
Chromosome 538,998,145
Chromosome 626,176,707
Chromosome 729,493,366
Chromosome 830,582,302
Chromosome 933,998,288
MoleculeTotal
Length
All801,035
Mitochondrion MT640,906
Chloroplast Pltd160,129