U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2160202v1

Organism name:
Pseudomonas ceruminis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BML-PP028
BioSample:
SAMD00422622
BioProject:
PRJDB10089
Submitter:
Department of Microbiology, Juntendo University School of Medicine
Date:
2021/11/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_021602025.1 (latest)
RefSeq assembly accession:
GCF_021602025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BQHW01
Assembly method:
shovel v. 1.1.0
Genome coverage:
50.3x
Sequencing technology:
Illumina MiSeq

IDs: 11813141 [UID] 31117248 [GenBank] 31179518 [RefSeq]

See Genome Information for Pseudomonas ceruminis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length6,332,233
Total ungapped length6,332,233
Number of contigs115
Contig N50166,853
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)115

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,332,2331156,332,233166,85300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas ceruminisPseudomonas ceruminis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013373895.1Pseudomonas ceruministype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013373895.1Pseudomonas ceruministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.6599.35
Best-match type99.9999.6599.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna