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ASM2155981v1

Organism name:: Escherichia coli (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: 83972
BioSample:: SAMN15325683
BioProject:: PRJNA640588
Submitter:: University of Muenster
Date:: 2022/01/24
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_021559815.1 (latest)
RefSeq assembly accession:: GCF_021559815.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: RS_HGAP_Assembly.3 protocol v. 2.2.0; BWA v. 07.7.17
Expected final version:: yes
Genome coverage:: 122x
Sequencing technology:: Illumina MiSeq and PacBio RSII

IDs: 11802331 [UID] 31073188 [GenBank] 31109888 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 267295 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021559815.1	=	GCF_021559815.1	ASM2155981v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::12/17/2023 04:57:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,966
CDSs (total)::4,850
Genes (coding)::4,615
CDSs (with protein)::4,615
Genes (RNA)::116
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::88
ncRNAs::6
Pseudo Genes (total)::235
CDSs (without protein)::235
Pseudo Genes (ambiguous residues)::0 of 235
Pseudo Genes (frameshifted)::98 of 235
Pseudo Genes (incomplete)::148 of 235
Pseudo Genes (internal stop)::59 of 235
Pseudo Genes (multiple problems)::61 of 235
Pseudo Genes (short protein)::4 of 235
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,132,861
Total ungapped length	5,132,861
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP058220.1	=	NZ_CP058220.1
Plasmid pABU	CP058221.1	=	NZ_CP058221.1

Molecule	Total Length
All	5,132,861
Chromosome	5,131,295
Plasmid pABU	1,566

	ANI	Query coverage	Subject coverage
Declared type	99.02	90.75	89.93
Best-match type	99.02	90.75	89.93

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ASM2155981v1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 267295 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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