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ASM2118364v1

Organism name:
Nocardia gipuzkoensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1619
BioSample:
SAMN23242888
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/12/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_021183645.1 (latest)
RefSeq assembly accession:
GCF_021183645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
canu v. 1.8
Genome coverage:
2827.85x
Sequencing technology:
Pacbio; Illumina

IDs: 11622761 [UID] 30586838 [GenBank] 30749258 [RefSeq]

See Genome Information for Nocardia gipuzkoensis

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/20/2024 03:28:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,422
CDSs (total)::7,360
Genes (coding)::7,240
CDSs (with protein)::7,240
Genes (RNA)::62
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::120
CDSs (without protein)::120
Pseudo Genes (ambiguous residues)::0 of 120
Pseudo Genes (frameshifted)::43 of 120
Pseudo Genes (incomplete)::93 of 120
Pseudo Genes (internal stop)::9 of 120
Pseudo Genes (multiple problems)::23 of 120
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,118,644
Total ungapped length8,118,644
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_021183655.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP089225.1=NZ_CP089225.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,118,644

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nocardia gipuzkoensisNocardia gipuzkoensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013839485.1Nocardia gipuzkoensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013839485.1Nocardia gipuzkoensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.6383.1383.60
Best-match type97.6383.1383.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna