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iyNeoPine1.1

Organism name:
Neodiprion pinetum (white pine sawfly)
Isolate:
iyNeoPine1
Sex:
male
BioSample:
SAMN21903850
BioProject:
PRJNA767423
Submitter:
United States Department of Agriculture
Date:
2021/12/10
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_021155775.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAJNQK01
Assembly method:
HiFiASM v. 0.16.1-r375; Juicebox Assembly Toolkit v. 1.11
Expected final version:
yes
Genome coverage:
83.0x
Sequencing technology:
PacBio Sequel; Illumina NovaSeq

IDs: 11600241 [UID] 30549378 [GenBank]

See Genome Information for Neodiprion pinetum

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length272,498,186
Total ungapped length272,490,086
Gaps between scaffolds0
Number of scaffolds112
Scaffold N5041,400,801
Scaffold L504
Number of contigs193
Contig N504,737,759
Contig L5016
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)112

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_021155835.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM037740.1n/an/a0
Chromosome 2CM037741.1n/an/a0
Chromosome 3CM037742.1n/an/a0
Chromosome 4CM037743.1n/an/a0
Chromosome 5CM037744.1n/an/a0
Chromosome 6CM037745.1n/an/a0
Chromosome 7CM037746.1n/an/a0
unplacedn/an/an/a105

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All272,498,186112272,490,08641,400,801810
Chromosome 141,400,801141,399,50141,400,801130
Chromosome 243,601,934143,600,83443,601,934110
Chromosome 344,038,905144,038,20544,038,90570
Chromosome 443,650,400143,649,10043,650,400130
Chromosome 536,027,634136,026,13436,027,634150
Chromosome 631,689,745131,688,14531,689,745160
Chromosome 727,032,962127,032,36227,032,96260
unplaced5,055,8051055,055,80559,12600
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