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M.indica_Dashehari_mat1.0

Organism name:
Mangifera indica (mango)
Infraspecific name:
Cultivar: Amrapali
BioSample:
SAMN04226523
BioProject:
PRJNA658221
Submitter:
ICAR-National Institute for Plant Biotechnology
Date:
2021/11/30
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_021014955.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAEMQJ01
Assembly method:
FALCON v. 0.3.0; Trio Canu v. 1.9
Expected final version:
no
Genome coverage:
51x
Sequencing technology:
PacBio RSII
Linked assembly:
GCA_021014495.1 (alternate pseudohaplotype of diploid)

IDs: 11529751 [UID] 30360488 [GenBank]

See Genome Information for Mangifera indica

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length368,775,949
Total ungapped length367,303,811
Gaps between scaffolds0
Number of scaffolds2,247
Scaffold N5018,069,110
Scaffold L509
Number of contigs3,861
Contig N50515,457
Contig L50198
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)2,247

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_021014975.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM037500.1n/an/a0
Chromosome 2CM037501.1n/an/a0
Chromosome 3CM037502.1n/an/a0
Chromosome 4CM037503.1n/an/a0
Chromosome 5CM037504.1n/an/a0
Chromosome 6CM037505.1n/an/a0
Chromosome 7CM037506.1n/an/a0
Chromosome 8CM037507.1n/an/a0
Chromosome 9CM037508.1n/an/a0
Chromosome 10CM037509.1n/an/a0
Chromosome 11CM037510.1n/an/a0
Chromosome 12CM037511.1n/an/a0
Chromosome 13CM037512.1n/an/a0
Chromosome 14CM037513.1n/an/a0
Chromosome 15CM037514.1n/an/a0
Chromosome 16CM037515.1n/an/a0
Chromosome 17CM037516.1n/an/a0
Chromosome 18CM037517.1n/an/a0
Chromosome 19CM037518.1n/an/a0
Chromosome 20CM037519.1n/an/a0
unplacedn/an/an/a2,227

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All368,775,9492,247367,303,81118,069,1101,6140
Chromosome 118,278,582118,193,33618,278,582950
Chromosome 220,380,726120,290,97920,380,726940
Chromosome 324,215,750124,102,30224,215,7501190
Chromosome 421,833,285121,762,23621,833,285770
Chromosome 515,627,489115,555,24215,627,489770
Chromosome 614,152,637114,076,63914,152,637820
Chromosome 714,211,515114,161,61614,211,515540
Chromosome 816,444,545116,391,24916,444,545580
Chromosome 921,597,482121,541,68421,597,482600
Chromosome 1012,410,594112,351,34712,410,594630
Chromosome 1117,828,422117,771,78017,828,422660
Chromosome 1214,424,890114,375,90214,424,890570
Chromosome 1318,260,037118,186,64918,260,037800
Chromosome 1412,706,761112,636,32012,706,761770
Chromosome 1516,890,900116,815,06416,890,900830
Chromosome 1620,834,448120,749,41220,834,448940
Chromosome 1712,455,128112,415,38512,455,128440
Chromosome 1818,069,110117,957,28418,069,1101260
Chromosome 1928,470,502128,369,06828,470,5021100
Chromosome 2016,044,156115,969,32716,044,156900
unplaced13,638,9902,22713,630,9909,89280