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M.indica_Neelam_pat1.0

Organism name:
Mangifera indica (mango)
Infraspecific name:
Cultivar: Amrapali
BioSample:
SAMN04226523
BioProject:
PRJNA658222
Submitter:
ICAR-National Institute for Plant Biotechnology
Date:
2021/11/30
Assembly type:
alternate-pseudohaplotype
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_021014495.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAEMQK01
Assembly method:
FALCON v. 0.3.0; Trio Canu v. 1.9
Expected final version:
no
Genome coverage:
50x
Sequencing technology:
PacBio RSII
Linked assembly:
GCA_021014955.1 (principal pseudohaplotype of diploid)

IDs: 11529741 [UID] 30360478 [GenBank]

See Genome Information for Mangifera indica

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length370,639,608
Total ungapped length369,305,799
Gaps between scaffolds0
Number of scaffolds2,293
Scaffold N5018,248,128
Scaffold L509
Number of contigs3,776
Contig N50676,600
Contig L50153
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)2,293

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_021014905.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM037480.1n/an/a0
Chromosome 2CM037481.1n/an/a0
Chromosome 3CM037482.1n/an/a0
Chromosome 4CM037483.1n/an/a0
Chromosome 5CM037484.1n/an/a0
Chromosome 6CM037485.1n/an/a0
Chromosome 7CM037486.1n/an/a0
Chromosome 8CM037487.1n/an/a0
Chromosome 9CM037488.1n/an/a0
Chromosome 10CM037489.1n/an/a0
Chromosome 11CM037490.1n/an/a0
Chromosome 12CM037491.1n/an/a0
Chromosome 13CM037492.1n/an/a0
Chromosome 14CM037493.1n/an/a0
Chromosome 15CM037494.1n/an/a0
Chromosome 16CM037495.1n/an/a0
Chromosome 17CM037496.1n/an/a0
Chromosome 18CM037497.1n/an/a0
Chromosome 19CM037498.1n/an/a0
Chromosome 20CM037499.1n/an/a0
unplacedn/an/an/a2,273

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All370,639,6082,293369,305,79918,248,1281,4830
Chromosome 119,284,384119,207,09119,284,384900
Chromosome 220,149,317120,079,02020,149,317750
Chromosome 324,462,049124,332,21124,462,0491440
Chromosome 422,492,068122,441,02222,492,068590
Chromosome 515,252,748115,205,20115,252,748540
Chromosome 612,851,279112,798,13112,851,279620
Chromosome 714,345,889114,298,89514,345,889550
Chromosome 815,773,643115,732,39415,773,643440
Chromosome 920,989,155120,938,20920,989,155580
Chromosome 1013,069,661113,009,46513,069,661690
Chromosome 1118,248,128118,192,48318,248,128640
Chromosome 1215,257,114115,192,56715,257,114710
Chromosome 1317,900,275117,823,07717,900,275810
Chromosome 1412,524,809112,471,41412,524,809590
Chromosome 1517,353,628117,280,38117,353,628770
Chromosome 1620,435,893120,375,89920,435,893680
Chromosome 1712,043,104112,001,85912,043,104460
Chromosome 1819,257,933119,155,93719,257,9331090
Chromosome 1929,165,514129,045,47129,165,5141330
Chromosome 2015,834,031115,777,08615,834,031640
unplaced13,948,9862,27313,947,98610,17810