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ASM2088962v1

Organism name:
Deinococcus radiophilus (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 27603
BioSample:
SAMN22895843
BioProject:
PRJNA777950
Submitter:
Binomica Labs
Date:
2021/11/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_020889625.1 (latest)
RefSeq assembly accession:
GCF_020889625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Trycycler v. 0.3.2
Expected final version:
no
Genome coverage:
800.0x
Sequencing technology:
Oxford Nanopore MinION

IDs: 11458571 [UID] 30165708 [GenBank] 30206818 [RefSeq]

See Genome Information for Deinococcus radiophilus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from ATCC 27603 - Carolina Biological Supply
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/20/2021 13:43:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,830
CDSs (total)::2,769
Genes (coding)::2,708
CDSs (with protein)::2,708
Genes (RNA)::61
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::61
CDSs (without protein)::61
Pseudo Genes (ambiguous residues)::0 of 61
Pseudo Genes (frameshifted)::30 of 61
Pseudo Genes (incomplete)::30 of 61
Pseudo Genes (internal stop)::12 of 61
Pseudo Genes (multiple problems)::10 of 61
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,827,165
Total ungapped length2,827,165
Total number of chromosomes and plasmids7

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020889635.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP086380.1=NZ_CP086380.1
Plasmid pRadio1CP086381.1=NZ_CP086381.1
Plasmid pRadio2CP086382.1=NZ_CP086382.1
Plasmid pRadio3CP086384.1=NZ_CP086384.1
Plasmid pRadio4CP086383.1=NZ_CP086383.1
Plasmid pRadio5CP086385.1=NZ_CP086385.1
Plasmid pRadio6CP086386.1=NZ_CP086386.1

Assembly statistics

MoleculeTotal
Length
All2,827,165
Chromosome 2,152,572
Plasmid pRadio1293,586
Plasmid pRadio2224,843
Plasmid pRadio394,446
Plasmid pRadio425,952
Plasmid pRadio525,463
Plasmid pRadio610,303

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Deinococcus radiophilusDeinococcus radiophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003966215.1Deinococcus radiophilustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003966215.1Deinococcus radiophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9897.2799.88
Best-match type99.9897.2799.88

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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