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ASM2073534v1

Organism name:
Mycobacteroides abscessus subsp. abscessus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1605
BioSample:
SAMN22365134
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/11/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_020735345.1 (latest)
RefSeq assembly accession:
GCF_020735345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 9.0.0, HGAP v. 4.0
Genome coverage:
4205.95x
Sequencing technology:
Pacbio; Illumina

IDs: 11374521 [UID] 29942858 [GenBank] 29959638 [RefSeq]

See Genome Information for Mycobacteroides abscessus

There are 2253 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/13/2023 22:06:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,975
CDSs (total)::4,922
Genes (coding)::4,871
CDSs (with protein)::4,871
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::51
CDSs (without protein)::51
Pseudo Genes (ambiguous residues)::0 of 51
Pseudo Genes (frameshifted)::21 of 51
Pseudo Genes (incomplete)::32 of 51
Pseudo Genes (internal stop)::1 of 51
Pseudo Genes (multiple problems)::3 of 51
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,033,491
Total ungapped length5,033,491
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020735355.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP085918.1=NZ_CP085918.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,033,491

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacteroides abscessus subsp. abscessusMycobacteroides abscessus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900453225.1Mycobacteroides abscessustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900453225.1Mycobacteroides abscessustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3793.1192.07
Best-match type99.3793.1192.07

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna