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ASM2056198v1

Organism name:
Streptococcus gordonii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DFI.1.43
BioSample:
SAMN22167384
BioProject:
PRJNA737800
Submitter:
University of Chicago
Date:
2021/10/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_020561985.1 (latest)
RefSeq assembly accession:
GCF_020561985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAJCOL01
Assembly method:
SPAdes v. v3.14.0
Expected final version:
no
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq

IDs: 11282621 [UID] 29740658 [GenBank] 29832928 [RefSeq]

See Genome Information for Streptococcus gordonii

There are 112 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/18/2021 19:05:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,191
CDSs (total)::2,140
Genes (coding)::2,091
CDSs (with protein)::2,091
Genes (RNA)::51
rRNAs::1, 4, 6 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3, 5 (16S, 23S)
tRNAs::37
ncRNAs::3
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::19 of 49
Pseudo Genes (incomplete)::28 of 49
Pseudo Genes (internal stop)::14 of 49
Pseudo Genes (multiple problems)::8 of 49
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,215,581
Total ungapped length2,215,581
Number of contigs74
Contig N50191,229
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)74

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,215,581742,215,581191,22900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus gordoniiStreptococcus gordonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019046945.1Streptococcus gordoniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019046945.1Streptococcus gordoniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.6089.3690.50
Best-match type95.6089.3690.50

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna