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ASM2042325v1

Organism name:
Proteobacteria bacterium (proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
MAG-3
BioSample:
SAMN20669592
BioProject:
PRJNA753045
Submitter:
University of Southern Denmark
Date:
2021/10/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_020423255.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAIOUF01
Assembly method:
MEGAHIT v. 1.1.3
Expected final version:
no
Genome coverage:
14x
Sequencing technology:
Illumina MiSeq

IDs: 11162711 [UID] 29445888 [GenBank]

See Genome Information for Pseudomonadota bacterium

There are 2718 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/07/2021 15:20:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,828
CDSs (total)::2,798
Genes (coding)::2,780
CDSs (with protein)::2,780
Genes (RNA)::30
rRNAs::1 (5S)
partial rRNAs::1 (5S)
tRNAs::29
ncRNAs::0
Pseudo Genes (total)::18
CDSs (without protein)::18
Pseudo Genes (ambiguous residues)::0 of 18
Pseudo Genes (frameshifted)::1 of 18
Pseudo Genes (incomplete)::15 of 18
Pseudo Genes (internal stop)::3 of 18
Pseudo Genes (multiple problems)::1 of 18
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,566,617
Total ungapped length2,566,617
Number of contigs1,717
Contig N501,437
Contig L50622
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,717

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,566,6171,7172,566,6171,43700
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