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Mindica_Amrapali_3.0

Organism name:
Mangifera indica (mango)
Infraspecific name:
Cultivar: Amrapali
BioSample:
SAMN04226523
BioProject:
PRJNA300605
Submitter:
ICAR-National Research Centre on Plant Biotechnology
Date:
2021/10/05
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_020138855.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LMWC01
Assembly method:
FALCON v. v. 0.2.2
Expected final version:
yes
Genome coverage:
289.58x
Sequencing technology:
PacBio; Illumina

IDs: 11083881 [UID] 29282158 [GenBank]

See Genome Information for Mangifera indica

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length411,307,930
Total ungapped length410,540,366
Gaps between scaffolds0
Number of scaffolds3,106
Scaffold N5012,113,862
Scaffold L5013
Number of contigs3,714
Contig N50978,616
Contig L50109
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)3,714

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_020138865.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG01CM035364.1n/an/a0
Linkage Group LG02CM035365.1n/an/a0
Linkage Group LG03CM035366.1n/an/a0
Linkage Group LG04CM035367.1n/an/a0
Linkage Group LG05CM035368.1n/an/a0
Linkage Group LG06CM035369.1n/an/a0
Linkage Group LG07CM035370.1n/an/a0
Linkage Group LG08CM035371.1n/an/a0
Linkage Group LG09CM035372.1n/an/a0
Linkage Group LG10CM035373.1n/an/a0
Linkage Group LG11CM035374.1n/an/a0
Linkage Group LG12CM035375.1n/an/a0
Linkage Group LG13CM035376.1n/an/a0
Linkage Group LG14CM035377.1n/an/a0
Linkage Group LG15CM035378.1n/an/a0
Linkage Group LG16CM035379.1n/an/a0
Linkage Group LG17CM035380.1n/an/a0
Linkage Group LG18CM035381.1n/an/a0
Linkage Group LG19CM035382.1n/an/a0
Linkage Group LG20CM035383.1n/an/a0
unplacedn/an/an/a3,086

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All411,307,9303,106410,540,36612,113,8626080
Linkage Group LG0115,605,411115,590,60815,605,411150
Linkage Group LG0214,171,948114,152,64614,171,948110
Linkage Group LG0316,773,800116,754,34816,773,800180
Linkage Group LG0421,650,607121,618,09821,650,607240
Linkage Group LG0512,113,862112,085,27412,113,862180
Linkage Group LG0611,935,536111,897,84211,935,536170
Linkage Group LG0711,803,856111,792,13311,803,856130
Linkage Group LG0811,562,566111,543,66611,562,566150
Linkage Group LG0918,763,956118,733,27218,763,956220
Linkage Group LG1010,397,284110,381,04710,397,284150
Linkage Group LG1114,666,941114,648,61014,666,941140
Linkage Group LG1212,431,808112,429,65312,431,808100
Linkage Group LG1316,110,611116,090,08616,110,611210
Linkage Group LG149,711,19419,709,2039,711,194110
Linkage Group LG1510,403,357110,398,25610,403,35750
Linkage Group LG1618,728,879118,704,52518,728,879200
Linkage Group LG1710,522,592110,516,88210,522,592100
Linkage Group LG1815,282,975115,263,13715,282,975190
Linkage Group LG1923,786,227123,756,49323,786,227320
Linkage Group LG2013,925,096113,918,49813,925,096100
unplaced120,959,4243,086120,556,08993,9372880