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ASM2008950v1

Organism name:
Leuconostoc gelidum subsp. aenigmaticum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 19375
BioSample:
SAMN19065388
BioProject:
PRJNA727911
Submitter:
University of Helsinki
Date:
2021/09/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_020089505.1 (latest)
RefSeq assembly accession:
GCF_020089505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAHBGA01
Assembly method:
Velvet v. 1.2.08
Expected final version:
yes
Genome coverage:
366x
Sequencing technology:
Illumina HiSeq

IDs: 10960631 [UID] 28969018 [GenBank] 29094588 [RefSeq]

See Genome Information for Leuconostoc gelidum

There are 30 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/12/2021 15:57:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,900
CDSs (total)::1,845
Genes (coding)::1,806
CDSs (with protein)::1,806
Genes (RNA)::55
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::39
CDSs (without protein)::39
Pseudo Genes (ambiguous residues)::2 of 39
Pseudo Genes (frameshifted)::24 of 39
Pseudo Genes (incomplete)::16 of 39
Pseudo Genes (internal stop)::12 of 39
Pseudo Genes (multiple problems)::15 of 39
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,944,754
Total ungapped length1,944,659
Gaps between scaffolds0
Number of scaffolds10
Scaffold N501,445,491
Scaffold L501
Number of contigs15
Contig N50476,747
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)10

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,944,754101,944,6591,445,49150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leuconostoc gelidum subsp. aenigmaticumLeuconostoc gelidum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019655935.1Leuconostoc gelidum subsp. aenigmaticumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019655935.1Leuconostoc gelidumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.6999.94
Best-match type99.9999.6999.94

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna