ASM2000251v1

Organism name:: Brassica juncea (eudicots)
Infraspecific name:: Cultivar: T84-66
BioSample:: SAMN17672863
BioProject:: PRJNA697823
Submitter:: Zhejiang University
Date:: 2021/09/15
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_020002515.1 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: JAGEPD01
Assembly method:: FALCON v. 0.3.0
Expected final version:: yes
Genome coverage:: 100x
Sequencing technology:: PacBio RSII

IDs: 10914261 [UID] 28872938 [GenBank]

See Genome Information for Brassica juncea

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020002515.1	n/a	n/a	ASM2000251v1	Chromosome	Latest GenBank

Comment

Global statistics

Total sequence length	904,412,012
Total ungapped length	904,369,005
Gaps between scaffolds	0
Number of scaffolds	744
Scaffold N50	54,976,184
Scaffold L50	8
Number of contigs	1,152
Contig N50	3,336,154
Contig L50	68
Total number of chromosomes and plasmids	18
Number of component sequences (WGS or clone)	744

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	CM034512.1	n/a	n/a	0
Chromosome A2	CM034513.1	n/a	n/a	0
Chromosome A3	CM034514.1	n/a	n/a	0
Chromosome A4	CM034515.1	n/a	n/a	0
Chromosome A5	CM034516.1	n/a	n/a	0
Chromosome A6	CM034517.1	n/a	n/a	0
Chromosome A7	CM034518.1	n/a	n/a	0
Chromosome A8	CM034519.1	n/a	n/a	0
Chromosome A9	CM034520.1	n/a	n/a	0
Chromosome A10	CM034521.1	n/a	n/a	0
Chromosome B1	CM034522.1	n/a	n/a	0
Chromosome B2	CM034523.1	n/a	n/a	0
Chromosome B3	CM034524.1	n/a	n/a	0
Chromosome B4	CM034525.1	n/a	n/a	0
Chromosome B5	CM034526.1	n/a	n/a	0
Chromosome B6	CM034527.1	n/a	n/a	0
Chromosome B7	CM034528.1	n/a	n/a	0
Chromosome B8	CM034529.1	n/a	n/a	0
unplaced	n/a	n/a	n/a	726

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	904,412,012	744	904,369,005	54,976,184	408
Chromosome A1	28,865,182	1	28,863,582	28,865,182	16
Chromosome A2	32,837,051	1	32,836,251	32,837,051	8
Chromosome A3	38,009,365	1	38,008,565	38,009,365	8
Chromosome A4	22,113,673	1	22,112,673	22,113,673	10
Chromosome A5	38,154,748	1	38,152,248	38,154,748	25
Chromosome A6	41,291,604	1	41,284,297	41,291,604	51
Chromosome A7	28,738,656	1	28,737,656	28,738,656	10
Chromosome A8	23,292,562	1	23,292,162	23,292,562	4
Chromosome A9	55,790,688	1	55,785,688	55,790,688	50
Chromosome A10	19,061,208	1	19,060,708	19,061,208	5
Chromosome B1	54,194,938	1	54,193,038	54,194,938	19
Chromosome B2	67,572,295	1	67,569,295	67,572,295	30
Chromosome B3	55,727,462	1	55,725,262	55,727,462	22
Chromosome B4	54,976,184	1	54,973,584	54,976,184	26
Chromosome B5	64,345,620	1	64,342,920	64,345,620	27
Chromosome B6	60,177,605	1	60,174,005	60,177,605	36
Chromosome B7	56,298,097	1	56,294,797	56,298,097	33
Chromosome B8	62,529,134	1	62,526,334	62,529,134	28
unplaced	100,435,940	726	100,435,940	192,599	0

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ASM2000251v1

See Genome Information for Brassica juncea

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

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