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D_kohkoa_1.0

Organism name:
Drosophila kohkoa (flies)
Infraspecific name:
Strain: X-145
BioSample:
SAMD00151354
BioProject:
PRJDB7680
Submitter:
Evolutionary Genetics Laboratory, Department of Biological Sciences, Tokyo Metropolitan University
Date:
2021/07/27
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_019972355.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
BJEL01
Assembly method:
HGAP v. 4
Genome coverage:
100x
Sequencing technology:
PacBioSequel; HiSeq2500

IDs: 10898181 [UID] 28840678 [GenBank]

See Genome Information for Drosophila kohkoa

History (Show revision history)

Comment

Global statistics

Total sequence length170,668,061
Total ungapped length170,668,061
Number of contigs87
Contig N503,597,765
Contig L5013
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)87

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_019972365.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2Ln/an/an/a21
Chromosome 2Rn/an/an/a3
Chromosome 3an/an/an/a11
Chromosome 3bn/an/an/a9
Chromosome 4n/an/an/a1
Chromosome Xn/an/an/a22
unplacedn/an/an/a20

Assembly statistics

MoleculeSequence RoleTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule170,668,06187170,668,0613,597,76500
Chromosome 2LAllAssembled moleculeUnlocalized scaffolds36,748,630036,748,6302102136,748,630036,748,6301,992,79201,992,792000000
Chromosome 2RAllAssembled moleculeUnlocalized scaffolds35,311,989035,311,98930335,311,989035,311,9899,728,61709,728,617000000
Chromosome 3aAllAssembled moleculeUnlocalized scaffolds27,760,179027,760,1791101127,760,179027,760,1792,531,53002,531,530000000
Chromosome 3bAllAssembled moleculeUnlocalized scaffolds31,966,245031,966,24590931,966,245031,966,2455,580,04205,580,042000000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds2,519,70102,519,7011012,519,70102,519,7012,519,70102,519,701000000
Chromosome XAllAssembled moleculeUnlocalized scaffolds32,765,856032,765,8562202232,765,856032,765,8563,077,72803,077,728000000
unplacedAssembled molecule3,595,461203,595,461367,42800