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ASM1979784v1

Organism name:
Candidatus Symbiopectobacterium sp. SyEd1 (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SyEd1
BioSample:
SAMN20924929
BioProject:
PRJNA756769
Submitter:
University of Liverpool
Date:
2021/08/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_019797845.1 (latest)
RefSeq assembly accession:
GCF_019797845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler hybrid v. 0.4.0
Expected final version:
yes
Genome coverage:
93.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore

IDs: 10800281 [UID] 28622948 [GenBank] 28643078 [RefSeq]

See Genome Information for Candidatus Symbiopectobacterium sp. SyEd1

History (Show revision history)

Comment

Bacteria and source DNA available from Pol Nadal Jimenez, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Ic2 Liverpool Science Park, 146 Brownlow Hill, Liverpool, L3 5RF, UK
The annotation was added by the NCBI Prokaryotic Genome Annotation ... Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/30/2021 15:15:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,601
CDSs (total)::4,494
Genes (coding)::4,182
CDSs (with protein)::4,182
Genes (RNA)::107
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::76
ncRNAs::10
Pseudo Genes (total)::312
CDSs (without protein)::312
Pseudo Genes (ambiguous residues)::0 of 312
Pseudo Genes (frameshifted)::178 of 312
Pseudo Genes (incomplete)::61 of 312
Pseudo Genes (internal stop)::95 of 312
Pseudo Genes (multiple problems)::18 of 312
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,942,431
Total ungapped length4,942,431
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_019797855.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP081864.1=NZ_CP081864.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,942,431

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Symbiopectobacterium sp. SyEd1Candidatus Symbiopectobacterium sp. SyEd1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000803315.1Pectobacterium actinidiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.1710.8010.85

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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