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ASM1974865v1

Organism name:
Bacillus velezensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: S/N-302-OC-B3
BioSample:
SAMN15705239
BioProject:
PRJNA644637
Submitter:
Jet Propulsion Laboratory, California Institute of Technology
Date:
2021/08/24
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_019748655.1 (latest)
RefSeq assembly accession:
GCF_019748655.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACLPX01
Assembly method:
CLC NGS Cell v. July 2020
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina HiSeq

IDs: 10773071 [UID] 28555168 [GenBank] 28583728 [RefSeq]

See Genome Information for Bacillus velezensis

There are 857 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/13/2020 17:52:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,850
CDSs (total)::3,766
Genes (coding)::3,716
CDSs (with protein)::3,716
Genes (RNA)::84
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::76
ncRNAs::5
Pseudo Genes (total)::50
CDSs (without protein)::50
Pseudo Genes (ambiguous residues)::0 of 50
Pseudo Genes (frameshifted)::31 of 50
Pseudo Genes (incomplete)::24 of 50
Pseudo Genes (internal stop)::11 of 50
Pseudo Genes (multiple problems)::13 of 50
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,941,453
Total ungapped length3,941,453
Number of contigs43
Contig N50333,874
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)43

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,941,453433,941,453333,87400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus velezensisBacillus velezensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001267695.1Bacillus velezensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001267695.1Bacillus velezensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3493.8391.58
Best-match type98.3493.8391.58

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna