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Source database (GenBank or RefSeq) File type

SWU_Gaff_1.0

Organism name:

Gambusia affinis (western mosquitofish)

Sex:

female

BioSample:

SAMN13752108

BioProject:

PRJNA599452

Submitter:

Southwest University

Date:

2021/08/25

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_019740435.1 (latest)

RefSeq assembly accession:

GCF_019740435.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAAAQJ01

Assembly method:

wtdbg v. AUGUST-2019

Expected final version:

Genome coverage:

109.0x

Sequencing technology:

Oxford Nanopore MinION

IDs: 10778051 [UID] 28565378 [GenBank] 28966628 [RefSeq]

See Genome Information for Gambusia affinis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019740435.1	≠	GCF_019740435.1	SWU_Gaff_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	680,166,006
Total ungapped length	662,596,148
Gaps between scaffolds	0
Number of scaffolds	37
Scaffold N50	29,761,488
Scaffold L50	11
Number of contigs	218
Contig N50	12,906,370
Contig L50	17
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	37

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG01	CM034011.1	=	NC_057868.1	0
Linkage Group LG02	CM034012.1	=	NC_057869.1	0
Linkage Group LG03	CM034013.1	=	NC_057870.1	0
Linkage Group LG04	CM034014.1	=	NC_057871.1	0
Linkage Group LG05	CM034015.1	=	NC_057872.1	0
Linkage Group LG06	CM034016.1	=	NC_057873.1	0
Linkage Group LG07	CM034017.1	=	NC_057874.1	0
Linkage Group LG08	CM034018.1	=	NC_057875.1	0
Linkage Group LG09	CM034019.1	=	NC_057876.1	0
Linkage Group LG10	CM034020.1	=	NC_057877.1	0
Linkage Group LG11	CM034021.1	=	NC_057878.1	0
Linkage Group LG12	CM034022.1	=	NC_057879.1	0
Linkage Group LG13	CM034023.1	=	NC_057880.1	0
Linkage Group LG14	CM034024.1	=	NC_057881.1	0
Linkage Group LG15	CM034025.1	=	NC_057882.1	0
Linkage Group LG16	CM034026.1	=	NC_057883.1	0
Linkage Group LG17	CM034027.1	=	NC_057884.1	0
Linkage Group LG18	CM034028.1	=	NC_057885.1	0
Linkage Group LG19	CM034029.1	=	NC_057886.1	0
Linkage Group LG20	CM034030.1	=	NC_057887.1	0
Linkage Group LG21	CM034031.1	=	NC_057888.1	0
Linkage Group LG22	CM034032.1	=	NC_057889.1	0
Linkage Group LG23	CM034033.1	=	NC_057890.1	0
Linkage Group LG24	CM034034.1	=	NC_057891.1	0
unplaced	n/a	n/a	n/a	12

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	680,149,392	36	662,579,534	29,761,488	181
Linkage Group LG01	45,125,082	1	34,276,610	45,125,082	30
Linkage Group LG02	33,515,161	1	33,495,631	33,515,161	6
Linkage Group LG03	32,887,360	1	32,580,308	32,887,360	9
Linkage Group LG04	32,673,047	1	32,672,795	32,673,047	6
Linkage Group LG05	31,977,068	1	31,976,855	31,977,068	3
Linkage Group LG06	31,970,598	1	31,575,732	31,970,598	10
Linkage Group LG07	31,012,137	1	31,000,546	31,012,137	2
Linkage Group LG08	30,503,261	1	30,195,079	30,503,261	5
Linkage Group LG09	30,252,746	1	30,252,633	30,252,746	2
Linkage Group LG10	29,879,072	1	29,878,859	29,879,072	3
Linkage Group LG11	29,761,488	1	29,726,167	29,761,488	6
Linkage Group LG12	28,514,379	1	28,514,066	28,514,379	4
Linkage Group LG13	28,174,217	1	28,129,619	28,174,217	7
Linkage Group LG14	27,482,798	1	26,391,248	27,482,798	10
Linkage Group LG15	26,918,255	1	26,918,142	26,918,255	2
Linkage Group LG16	26,195,410	1	26,195,297	26,195,410	2
Linkage Group LG17	26,185,198	1	24,680,211	26,185,198	11
Linkage Group LG18	26,063,569	1	24,807,068	26,063,569	13
Linkage Group LG19	24,670,963	1	24,655,676	24,670,963	3
Linkage Group LG20	24,493,518	1	24,127,584	24,493,518	6
Linkage Group LG21	23,709,503	1	23,566,747	23,709,503	4
Linkage Group LG22	23,540,282	1	23,540,169	23,540,282	2
Linkage Group LG23	19,955,793	1	19,268,728	19,955,793	20
Linkage Group LG24	13,961,689	1	13,426,966	13,961,689	15
unplaced	726,798	12	726,798	103,085	0

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SWU_Gaff_1.0

See Genome Information for Gambusia affinis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear