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AU_Pcat_1.0

Organism name:
Pituophis catenifer pumilus (gopher snake)
Infraspecific name:
Ecotype: Santa Cruz Island
Isolate:
PC167
Sex:
female
BioSample:
SAMN14089663
BioProject:
PRJNA576200
Submitter:
AUBURN UNIVERSITY
Date:
2021/08/18
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_019677565.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAHUAB01
Assembly method:
Supernova v. 1.0; Chicago v. MAR-2019; Dovetail Hi-C v. MAR-2019
Expected final version:
yes
Genome coverage:
54.0x
Sequencing technology:
Illumina HiSeq

IDs: 10737281 [UID] 28451378 [GenBank]

See Genome Information for Pituophis catenifer

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,516,097,738
Total ungapped length1,349,093,123
Gaps between scaffolds0
Number of scaffolds63,678
Scaffold N50198,106,452
Scaffold L503
Number of contigs351,217
Contig N507,987
Contig L5039,429
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)63,678

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,516,097,73863,6781,349,093,123198,106,452287,5390