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ASM1934306v1

Organism name:
Streptococcus pyogenes (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ABC25
BioSample:
SAMN14234425
BioProject:
PRJNA609136
Submitter:
UTHSC/McGovern Medical School
Date:
2021/07/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_019343065.1 (latest)
RefSeq assembly accession:
GCF_019343065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.6
Expected final version:
yes
Genome coverage:
186x
Sequencing technology:
Illumina MiSeq; ONT GridION

IDs: 10568921 [UID] 28028338 [GenBank] 28072068 [RefSeq]

See Genome Information for Streptococcus pyogenes

There are 23527 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/29/2023 03:07:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,898
CDSs (total)::1,809
Genes (coding)::1,737
CDSs (with protein)::1,737
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::72
CDSs (without protein)::72
Pseudo Genes (ambiguous residues)::0 of 72
Pseudo Genes (frameshifted)::45 of 72
Pseudo Genes (incomplete)::25 of 72
Pseudo Genes (internal stop)::30 of 72
Pseudo Genes (multiple problems)::24 of 72
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,890,992
Total ungapped length1,890,992
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_019343075.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP049696.1=NZ_CP049696.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,890,992

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pyogenesStreptococcus pyogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002055535.1Streptococcus pyogenestype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002055535.1Streptococcus pyogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6593.0991.93
Best-match type98.6593.0991.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna