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EIMB_PSib_M29_1.0

Organism name:
Populus x sibirica (eudicots)
Isolate:
M29
Sex:
male
BioSample:
SAMN15454199
BioProject:
PRJNA644206
Submitter:
Engelhardt Institute of Molecular Biology, Russian Academy of Sciences
Date:
2021/07/13
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_019202695.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGMVL01
Assembly method:
Canu v. 2.1; Racon v. 1.4.3; Medaka v. 1.0.3; POLCA v. 3.4.1
Expected final version:
no
Genome coverage:
50.0x
Sequencing technology:
Oxford Nanopore MinION; Illumina HiSeq 2500

IDs: 10489301 [UID] 27840128 [GenBank]

See Genome Information for Populus x sibirica

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length818,859,589
Total ungapped length818,859,589
Number of contigs2,414
Contig N501,522,422
Contig L50151
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)2,414

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced817,193,9532,375817,193,9531,522,42200
MoleculeSequence RoleTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule1,665,636391,665,636177,92300
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds1,526,06301,526,063380381,526,06301,526,063225,1110225,111000000
Chloroplast PltdAllAssembled moleculeUnlocalized scaffolds139,5730139,573101139,5730139,573139,5730139,573000000