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ASM1870372v1

Organism name:
Brassica juncea (eudicots)
Infraspecific name:
Cultivar: Sichuan Huangzi
BioSample:
SAMN14466390
BioProject:
PRJNA615316
Submitter:
Hunan agricultural university
Date:
2021/06/04
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_018703725.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAATWR01
Assembly method:
FALCON v. 2018
Expected final version:
yes
Genome coverage:
98.0x
Sequencing technology:
PacBio Sequel; Illumina HiSeq

IDs: 10219081 [UID] 27184808 [GenBank]

See Genome Information for Brassica juncea

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length933,495,403
Total ungapped length889,060,082
Gaps between scaffolds0
Number of scaffolds1,544
Scaffold N5059,341,207
Scaffold L507
Number of contigs2,522
Contig N501,926,153
Contig L50101
Total number of chromosomes and plasmids18
Number of component sequences (WGS or clone)1,544

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_018703745.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A01CM031926.1n/an/a0
Chromosome B01CM031935.1n/an/a0
Chromosome A02CM031927.1n/an/a0
Chromosome B02CM031936.1n/an/a0
Chromosome A03CM031928.1n/an/a0
Chromosome B03CM031937.1n/an/a0
Chromosome A04CM031929.1n/an/a0
Chromosome B04CM031938.1n/an/a0
Chromosome A05CM031930.1n/an/a0
Chromosome B05CM031939.1n/an/a0
Chromosome A06CM031931.1n/an/a0
Chromosome B06CM031940.1n/an/a0
Chromosome A07CM031932.1n/an/a0
Chromosome B07CM031941.1n/an/a0
Chromosome A08CM031933.1n/an/a0
Chromosome B08CM031942.1n/an/a0
Chromosome A09CM031934.1n/an/a0
Chromosome A10CM031925.1n/an/a0
unplacedn/an/an/a1,526

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All933,495,4031,544889,060,08259,341,2079780
Chromosome A0134,754,614134,677,93634,754,614330
Chromosome B0157,744,269155,373,96957,744,269850
Chromosome A0234,146,144134,110,91234,146,144160
Chromosome B0276,001,744171,968,21476,001,7441060
Chromosome A0338,779,905138,673,42838,779,905130
Chromosome B0361,251,237158,739,17861,251,237730
Chromosome A0422,581,918122,560,36922,581,918180
Chromosome B0457,324,371155,045,06857,324,371630
Chromosome A0532,642,599132,627,34532,642,599250
Chromosome B0566,415,164164,457,48066,415,164760
Chromosome A0635,710,255132,579,84235,710,255300
Chromosome B0671,686,866162,188,19471,686,866860
Chromosome A0730,007,521129,860,00930,007,521190
Chromosome B0759,341,207155,317,25559,341,207870
Chromosome A0825,266,533124,994,16325,266,533180
Chromosome B0871,196,026165,571,10471,196,0261060
Chromosome A0970,268,304164,562,81670,268,304630
Chromosome A1022,171,170121,336,40622,171,170100
unplaced66,205,5561,52664,416,39468,153510
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