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Source database (GenBank or RefSeq) File type

NA19240.pri.mat.f1_v2

Organism name:: Homo sapiens (human)
Isolate:: NA19240
Sex:: female
BioSample:: SAMN03838746
BioProject:: PRJNA727341
Submitter:: UCSC Genomics Institute
Date:: 2021/05/26
Assembly type:: haploid (maternal haplotype of diploid)
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_018503275.1 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: JAHEOL01
Assembly method:: Hifiasm v. 0.14
Expected final version:: no
Genome coverage:: 40x
Sequencing technology:: PacBio Sequel

IDs: 10123421 [UID] 26915178 [GenBank]

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1094 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Total sequence length	3,032,066,086
Total ungapped length	3,032,066,060
Gaps between scaffolds	0
Number of scaffolds	387
Scaffold N50	28,898,930
Scaffold L50	35
Number of contigs	388
Contig N50	28,898,930
Contig L50	35
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	387

Supplemental Content

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Assembly Information

Related Information

BioProject
BioProject
BioSample
BioSample
Genome
Related Genome records
Linked assembly from diploid
Genome assembly that is the other (pseudo)haplotype from the same diploid individual as the current genome assembly.
Nucleotide INSDC
Nucleotide INSDC (GenBank)
PubMed
PubMed
Taxonomy
Taxonomy
WGS Master
WGS Master

PubMed articles for this assembly

A draft human pangenome reference.
A draft human pangenome reference.
Liao WW, Asri M, Ebler J, Doerr D, Haukness M...

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NA19240.pri.mat.f1_v2 - Genome - Assembly - NCBI
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Assembly

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Assembly Definition
Assembly Statistics

Global assembly definition

Download the full sequence report

Click on the table row to see sequence details in the table to the right

Assembly Unit Name
Primary Assembly
non-nuclear

The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

Primary Assembly
non-nuclear

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
unplaced	3,032,049,516	386	3,032,049,490	28,898,930	1	0

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
Mitochondrion MT	AllAssembled moleculeUnlocalized scaffolds	16,570016,570	101	16,570016,570	16,570016,570	000	000