U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



HG02717.pri.mat.f1_v2

Organism name:
Homo sapiens (human)
Isolate:
HG02717
Sex:
male
BioSample:
SAMN17861666
BioProject:
PRJNA725859
Submitter:
UCSC Genomics Institute
Date:
2021/05/24
Assembly type:
haploid (maternal haplotype of diploid)
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_018469935.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAHAOR01
Assembly method:
Hifiasm v. 0.14
Expected final version:
no
Genome coverage:
45x
Sequencing technology:
PacBio Sequel
Linked assembly:
GCA_018470425.1 (paternal haplotype of diploid)

IDs: 10101261 [UID] 26856098 [GenBank]

See Genome Information for Homo sapiens

There are 1134 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,038,320,685
Total ungapped length3,038,320,651
Gaps between scaffolds0
Number of scaffolds323
Scaffold N5043,942,241
Scaffold L5022
Number of contigs324
Contig N5043,942,241
Contig L5022
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)323

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,038,304,1123223,038,304,07843,942,24110
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds16,573016,57310116,573016,57316,573016,573000000