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ASM1840007v1

Organism name:
Danio rerio (zebrafish)
Infraspecific name:
Strain: T5D
BioSample:
SAMN09710566
BioProject:
PRJNA482650
Submitter:
North Carolina State University
Date:
2021/05/19
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_018400075.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
GATK FastaAlternateReferenceMaker v. AUG-2016
Expected final version:
yes
Reference guided assembly:
GRCz10 (danRer10)
Genome coverage:
5.0x
Sequencing technology:
Illumina HiSeq

IDs: 10072541 [UID] 26781408 [GenBank]

See Genome Information for Danio rerio

There are 17 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,338,639,271
Total ungapped length1,336,796,155
Gaps between scaffolds0
Number of scaffolds25
Scaffold N5054,124,915
Scaffold L5011
Number of contigs19,448
Contig N501,203,134
Contig L50270
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)25

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_018400125.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP068735.1n/an/a
Chromosome 2CP068736.1n/an/a
Chromosome 3CP068737.1n/an/a
Chromosome 4CP068738.1n/an/a
Chromosome 5CP068739.1n/an/a
Chromosome 6CP068740.1n/an/a
Chromosome 7CP068741.1n/an/a
Chromosome 8CP068742.1n/an/a
Chromosome 9CP068743.1n/an/a
Chromosome 10CP068744.1n/an/a
Chromosome 11CP068745.1n/an/a
Chromosome 12CP068746.1n/an/a
Chromosome 13CP068747.1n/an/a
Chromosome 14CP068748.1n/an/a
Chromosome 15CP068749.1n/an/a
Chromosome 16CP068750.1n/an/a
Chromosome 17CP068751.1n/an/a
Chromosome 18CP068752.1n/an/a
Chromosome 19CP068753.1n/an/a
Chromosome 20CP068754.1n/an/a
Chromosome 21CP068755.1n/an/a
Chromosome 22CP068756.1n/an/a
Chromosome 23CP068757.1n/an/a
Chromosome 24CP068758.1n/an/a
Chromosome 25CP068759.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,338,639,271251,336,796,15554,124,91519,4230
Chromosome 158,785,646158,721,34858,785,6466900
Chromosome 259,455,749159,373,22659,455,7498800
Chromosome 362,309,442162,240,94662,309,4427370
Chromosome 476,559,324176,500,02576,559,3246320
Chromosome 571,623,509171,532,13871,623,5099620
Chromosome 660,182,086160,091,30560,182,0869520
Chromosome 773,995,704173,899,83573,995,7041,0150
Chromosome 854,124,915154,072,45454,124,9155610
Chromosome 956,811,974156,741,74056,811,9747410
Chromosome 1045,511,566145,463,89045,511,5665050
Chromosome 1145,052,521144,981,75745,052,5217540
Chromosome 1249,168,109149,064,68749,168,1091,0890
Chromosome 1351,715,242151,651,29651,715,2426810
Chromosome 1451,872,344151,810,68751,872,3446460
Chromosome 1547,700,757147,622,80447,700,7578230
Chromosome 1655,302,005155,204,26155,302,0051,0140
Chromosome 1753,268,933153,191,68853,268,9338060
Chromosome 1850,937,954150,838,88450,937,9541,0220
Chromosome 1948,724,230148,656,57148,724,2307080
Chromosome 2055,296,965155,220,02355,296,9658030
Chromosome 2145,833,048145,763,66645,833,0487400
Chromosome 2239,165,900139,111,50239,165,9005750
Chromosome 2346,207,417146,135,70446,207,4177500
Chromosome 2442,194,100142,126,36742,194,1007070
Chromosome 2536,839,831136,779,35136,839,8316300
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