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ASM1834379v1

Organism name:
Pasteurella atlantica (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NVI-9100
BioSample:
SAMN19004907
BioProject:
PRJNA727067
Submitter:
Norwegian Veterinary Institute
Date:
2021/05/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_018343795.1 (latest)
RefSeq assembly accession:
GCF_018343795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
62.0x
Sequencing technology:
PacBio RSII

IDs: 10036501 [UID] 26688718 [GenBank] 26864088 [RefSeq]

See Genome Information for Pasteurella atlantica

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Norwegian Veterinary Institute

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/07/2022 04:07:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,216
CDSs (total)::2,146
Genes (coding)::2,086
CDSs (with protein)::2,086
Genes (RNA)::70
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::29 of 60
Pseudo Genes (incomplete)::22 of 60
Pseudo Genes (internal stop)::21 of 60
Pseudo Genes (multiple problems)::8 of 60
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,301,649
Total ungapped length2,301,649
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018343805.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP074346.1=NZ_CP074346.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,301,649

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pasteurella atlanticaPasteurella atlantica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900109845.1Pasteurella skyensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.4050.1752.70

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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